Browse Element(s) Details


Os.54430.1.S1_at

Description gb:AK105148.1
DB_XREF= gi:32990357
TID=Os.54430.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C06, full insert sequence.
FL= gb:AK105148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g372002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein
LOC_Os02g37180Os.49112.1.S1_at9/112+22468765..22469820expressed protein
LOC_Os02g37190Os.7108.1.S1_at11/112+22471921..22473077expressed protein
LOC_Os02g37200Os.54430.1.S1_at2/112+22475779..22476610expressed protein
LOC_Os02g37210OsAffx.2889.1.S1_at11/112+22480288..22480518hypothetical protein
LOC_Os02g37220NANA2+22482259..22485830transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g37230OsAffx.15404.1.S1_at11/112+22487942..22489234hypothetical protein
LOC_Os02g37240OsAffx.27607.2.S1_s_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.27607.1.S1_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.24609.1.S1_at11/112+22489357..22494099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54430.1.S1_at--1097--9471Chr02:22476009..22476470 (25 bp)
TCTGCCGAACAAACTCATGACGACG
LOC_Os02g37200
Os.54430.1.S1_at--370--691Chr02:22475993..22476017 (25 bp)
ATGACGACGGTGACAATCCGCCGGA
LOC_Os02g37200
Os.54430.1.S1_at--1144--611Chr02:22475779..22475803 (25 bp)
ATGCTGCCCATGCAAGGGTGTCTAG
NONE
Os.54430.1.S1_at--614--7451Chr02:22475762..22475786 (25 bp)
GTGTCTAGGACTGATGCGACTGGTC
NONE
Os.54430.1.S1_at--180--1631Chr02:22475707..22475731 (25 bp)
AGCGAGCTCCGTACAACTCATATGA
NONE
Os.54430.1.S1_at--42--1531Chr02:22475682..22475706 (25 bp)
AGCAGATCACACATGGTGGTTCATA
NONE
Os.54430.1.S1_at--821--6651Chr02:22475587..22475611 (25 bp)
GTTGATGTCATGATCTGATACCTAT
NONE
Os.54430.1.S1_at--364--6491Chr02:22475571..22475595 (25 bp)
GATACCTATGGTGTCATGCTGACAT
NONE
Os.54430.1.S1_at--91--271Chr02:22475539..22475563 (25 bp)
ATATGAGTATTACGTCCGGTATCAC
NONE
Os.54430.1.S1_at--1085--9271Chr02:22475525..22475549 (25 bp)
TCCGGTATCACGGTATCATATTCGA
NONE
Os.54430.1.S1_at--735--6471Chr02:22475480..22475504 (25 bp)
GATACCACATCTGATACCTAAGGAA
NONE
Target Sequence 
TCTGCCGAACAAACTCATGACGACGGTGACAATCCGCCGGAGTCGCCGGACCACGAAGACCCACCGCCCTCCCCTGAATA
CTACGACCCACCGCCATCGCCGGACTACTATGACCCGCCGCACTCACCGGACTACTACGACCCGCCGCCATCACCGGACT
ACTACGACCCGCCACCGTCGCCGTACTACGGCGGAGGCGGTGGATATGGCAAACCACCGCCGCCGCCGCCATGCTGCCCA
TGCAAGGGTGTCTAGGACTGATGCGACTGGTCCGGCGAGTGCTGCTCGCCGTAGGCCGATGGAGCGAGCTCCGTACAACT
CATATGAAGCAGATCACACATGGTGGTTCATAAATAAACACTTCTCCTTAATTAAATATTATTCAAAATTACTAGAAAAA
TGTATACAGTTCAAATAAAATAGTTGATGTCATGATCTGATACCTATGGTGTCATGCTGACATCATCATGATATGAGTAT
TACGTCCGGTATCACGGTATCATATTCGATATACCTATCTAGTATCATAGATACCACATCTGATACCTAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis