Browse Element(s) Details


Os.20122.1.S1_at

Description gb:AK101861.1
DB_XREF= gi:32987070
TID=Os.20122.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070B12, full insert sequence.
FL= gb:AK101861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3714010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein
LOC_Os02g37180Os.49112.1.S1_at9/112+22468765..22469820expressed protein
LOC_Os02g37190Os.7108.1.S1_at11/112+22471921..22473077expressed protein
LOC_Os02g37200Os.54430.1.S1_at2/112+22475779..22476610expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20122.1.S1_at--654--2431Chr02:22448091..22448115 (25 bp)
AAAAGTCCCATACCGCTATGGCAGG
LOC_Os02g37140
Os.20122.1.S1_at--954--10071Chr02:22448075..22448099 (25 bp)
TATGGCAGGCTTCGCTACTTTATTA
LOC_Os02g37140
Os.20122.1.S1_at--938--6151Chr02:22448033..22448057 (25 bp)
GAGGTTGCCAAGTTTGATTCGACGA
LOC_Os02g37140
Os.20122.1.S1_at--235--5771Chr02:22448013..22448037 (25 bp)
GACGATTTTGTCACGGATCTTCTGA
LOC_Os02g37140
Os.20122.1.S1_at--398--6431Chr02:22447998..22448022 (25 bp)
GATCTTCTGAGTTACTGTGTGGCAC
LOC_Os02g37140
Os.20122.1.S1_at--738--8671Chr02:22447983..22448007 (25 bp)
TGTGTGGCACAATTTCTGATGCTGG
LOC_Os02g37140
Os.20122.1.S1_at--993--8211NONE
GGAATTACTGGTCACAATCTGGGAA
NONE
Os.20122.1.S1_at--81--8211Chr02:22447071..22447095 (25 bp)
GGAATCTATTAACGGACGGCCAAGA
LOC_Os02g37140
Os.20122.1.S1_at--69--8471Chr02:22447041..22447065 (25 bp)
TGGCCCACTCAAAACAGCGAAATGC
LOC_Os02g37140
Os.20122.1.S1_at--626--10311Chr02:22446960..22446984 (25 bp)
TTTCAGGCTGAATGTATGGCCCAGC
LOC_Os02g37140
Os.20122.1.S1_at--692--6791Chr02:22446918..22446942 (25 bp)
GTTATAAACCAAAGCCACGCTGCAG
LOC_Os02g37140
Target Sequence 
AAAAGTCCCATACCGCTATGGCAGGCTTCGCTACTTTATTATTTTATTGATCTGAAGAGAGGTTGCCAAGTTTGATTCGA
CGATTTTGTCACGGATCTTCTGAGTTACTGTGTGGCACAATTTCTGATGCTGGTTGTTGAACCGATGAGTGATCTGATTT
TTTTGGGTGGCAAGTATTGTTGCCAGTAAAATATATGGAAGGGCCGAAAGATTTGGAAATGCNCTCAGCGATCAGTTTCA
ATAAATCATCAACATAGGAATTACTGGTCACAATCTGGGAAAGAAANNNNGGAATCTATTAACGGACGGCCAAGATTCCC
TGGCCCACTCAAAACAGCGAAATGCACAAAGCCTCGNTCGGCGTCTGACAGGCTGTCACGGACGTGNGCTCACAATCGGG
NTTTCAGGCTGAATGTATGGCCCAGCCAGATAGGAAAGACAGCGTTATAAACCAAAGCCACGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis