Browse Element(s) Details


OsAffx.2887.1.S1_at

Description tigr:9630.m03549
TID=OsAffx.2887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3710010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2887.1.S1_at--327--3131Chr02:22424884..22424908 (25 bp)
AATTTCACAGTACCAATCGCCTACA
LOC_Os02g37100
OsAffx.2887.1.S1_at--500--9851Chr02:22424911..22424935 (25 bp)
TACAATAACACTGCTGATCACCTAG
LOC_Os02g37100
OsAffx.2887.1.S1_at--948--6431NONE
GATCACCTAGTGAAGAACACGTCCA
NONE
OsAffx.2887.1.S1_at--785--7351Chr02:22426549..22426573 (25 bp)
GTGAAGAACACGTCCATGTCGAGCC
LOC_Os02g37100
OsAffx.2887.1.S1_at--981--8711Chr02:22426565..22426589 (25 bp)
TGTCGAGCCGTGGTTCATCAACAGA
LOC_Os02g37100
OsAffx.2887.1.S1_at--249--5851Chr02:22426632..22426656 (25 bp)
GACCAAGAAGGTTGAAGCCGTGCAA
LOC_Os02g37100
OsAffx.2887.1.S1_at--737--8971Chr02:22426644..22426668 (25 bp)
TGAAGCCGTGCAAGTTGGATCAAAC
LOC_Os02g37100
OsAffx.2887.1.S1_at--1022--6611Chr02:22426657..22426681 (25 bp)
GTTGGATCAAACTCTGTCCATGGAG
LOC_Os02g37100
OsAffx.2887.1.S1_at--897--6131Chr02:22426679..22426703 (25 bp)
GAGGGAGCCCGGATGTTCATCAGTT
LOC_Os02g37100
OsAffx.2887.1.S1_at--416--8791Chr02:22426692..22426716 (25 bp)
TGTTCATCAGTTTGCGAAGATAGTA
LOC_Os02g37100
OsAffx.2887.1.S1_at--483--4091Chr02:22426706..22426730 (25 bp)
CGAAGATAGTAGTGGTTGAACGCCG
LOC_Os02g37100
Target Sequence 
AATTTCACAGTACCAATCGCCTACAACTACAATAACACTGCTGATCACCTAGTGAAGAACACGTCCATGTCGAGCCGTGG
TTCATCAACAGAAAGAGGATTAGAAGATTCAAAGAAGAAGCTCGATGAGGAGAAGACCAAGAAGGTTGAAGCCGTGCAAG
TTGGATCAAACTCTGTCCATGGAGGGAGCCCGGATGTTCATCAGTTTGCGAAGATAGTAGTGGTTGAACGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis