Browse Element(s) Details


Os.27022.2.S1_at

Description gb:CB657552
DB_XREF= gi:29661277
DB_XREF=OSJNEc12P24.f
CLONE=OSJNEc12P24
TID=Os.27022.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27022 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172822.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3712011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27022.2.S1_at--730--10391Chr02:22432129..22432153 (25 bp)
TTTTGTCAAGGATGTCTGCATCGAT
LOC_Os02g37120
Os.27022.2.S1_at--729--8011Chr02:22432101..22432125 (25 bp)
GGAGTACTTCCGCATCGGAAAATTT
LOC_Os02g37120
Os.27022.2.S1_at--204--6291Chr02:22432059..22432083 (25 bp)
GATGAGAAGTCACCACCAAATTTTG
LOC_Os02g37120
Os.27022.2.S1_at--678--3191Chr02:22431953..22431977 (25 bp)
CAAAAACTGTTCTCCTACCTGTTGG
LOC_Os02g37120
Os.27022.2.S1_at--677--9971Chr02:22431938..22431962 (25 bp)
TACCTGTTGGATTCGCTGCTGACGA
LOC_Os02g37120
Os.27022.2.S1_at--1043--6571Chr02:22431929..22431953 (25 bp)
GATTCGCTGCTGACGATAACACGGA
LOC_Os02g37120
Os.27022.2.S1_at--649--1451Chr02:22431778..22431802 (25 bp)
AGAAGAATCCCAGACCCAGCATCAA
LOC_Os02g37120
Os.27022.2.S1_at--502--5811Chr02:22431766..22431790 (25 bp)
GACCCAGCATCAAAGCACAACTTCT
LOC_Os02g37120
Os.27022.2.S1_at--372--4211Chr02:22431719..22431743 (25 bp)
CCCCTGTTCATGAAGAGGCTATTGC
LOC_Os02g37120
Os.27022.2.S1_at--690--10791Chr02:22431652..22431676 (25 bp)
TTGTTTTCTCATTACCACTATCACC
LOC_Os02g37120
Os.27022.2.S1_at--896--9971Chr02:22431640..22431664 (25 bp)
TACCACTATCACCAGGTTTGTCATT
LOC_Os02g37120
Target Sequence 
TTTTGTCAAGGATGTCTGCATCGATGAAGGAGTACTTCCGCATCGGAAAATTTCAGCAGAAAAAAAGTTAGATGAGAAGT
CACCACCAAATTTTGATTTCCTAATGATAGACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATAT
GCACATGGACAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAACAATGTGATCT
TGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTGCATGAGTTACTTAAGCTTGAAAGTGCAGAAG
AATCCAAGGAAAGACTTAAACTTGAAAGTGCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAA
AAAAACATGCCCCCTGTTCATGAAGAGGCTATTGCACAGGTAACCACATAAGTTACTGGCTTAATCTGTAATCAAATTTG
TTTTCTCATTACCACTATCACCAGGTTTGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27022.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis