Browse Element(s) Details


Os.27022.1.A1_at

Description gb:CB657553
DB_XREF= gi:29661278
DB_XREF=OSJNEc12P24.r
CLONE=OSJNEc12P24
TID=Os.27022.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27022 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172822.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3712011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27022.1.A1_at--422--9591Chr02:22430880..22430904 (25 bp)
TCTTGGGCCTAGCATCATGTGCAAC
LOC_Os02g37120
Os.27022.1.A1_at--842--5831Chr02:22430847..22430871 (25 bp)
GACCTCTGGTCACATTGGCAACATC
LOC_Os02g37120
Os.27022.1.A1_at--762--6491Chr02:22430810..22430834 (25 bp)
GATAGTAGCACGACAAGCACCCGGT
LOC_Os02g37120
Os.27022.1.A1_at--985--11Chr02:22430630..22430654 (25 bp)
ATTGGAACAGCAGCCCGGTGAGGAT
LOC_Os02g37120
Os.27022.1.A1_at--335--8151Chr02:22430543..22430567 (25 bp)
GGAAATTCTGAGCATCCCCTTTTCT
LOC_Os02g37120
Os.27022.1.A1_at--228--9511Chr02:22430502..22430526 (25 bp)
TCTCTGAAATTCTGATGCGCTGCTG
LOC_Os02g37120
Os.27022.1.A1_at--656--5591Chr02:22430468..22430492 (25 bp)
GAAATCTATCTGTAACTCCACCGAA
LOC_Os02g37120
Os.27022.1.A1_at--231--5331Chr02:22430446..22430470 (25 bp)
GAAGTGTCTGATTTGCACGCCATAT
LOC_Os02g37120
Os.27022.1.A1_at--575--3351Chr02:22430431..22430455 (25 bp)
CACGCCATATATGTATACCCTGCTT
LOC_Os02g37120
Os.27022.1.A1_at--947--2791Chr02:22430378..22430402 (25 bp)
AAGATGGCTTGTCGGTTTTGTCAGT
LOC_Os02g37120
Os.27022.1.A1_at--206--1091Chr02:22430356..22430380 (25 bp)
AGTGGCTTGTAACTCTGTACCGTGA
LOC_Os02g37120
Target Sequence 
TCTTGGGCCTAGCATCATGTGCAACCCAGTGTCGACCTCTGGTCACATTGGCAACATCTCCATCCGGTCAGATAGTAGCA
CGACAAGCACCCGGTCCTTCGCATTTCCAGTGTTACAGTGGGATTGGAACAGCAGCCCGGTGAGGATGGCGAGAGCGGAG
CGGAGGCGAAACAAGCGGCGCCGTGGCTGGAATAAGGGCTTCCTCTGCTGGAAATTCTGAGCATCCCCTTTTCTTATACC
TCCTGAAGAATCTCTGAAATTCTGATGCGCTGCTGAAGTCGGTCGAAATCTATCTGTAACTCCACCGAAGTGTCTGATTT
GCACGCCATATATGTATACCCTGCTTNTTCTTTTTTGTTGGTCCTGTAGCAGGTAAGATGGCTTGTCGGTTTTGTCAGTG
GCTTGTAACTCTGTACCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27022.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis