Browse Element(s) Details


Os.6566.1.S1_at

Description gb:AK059396.1
DB_XREF= gi:32969414
TID=Os.6566.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A08, full insert sequence.
FL= gb:AK059396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3709011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37070Os.11272.1.S1_at2/112+22395614..22395856hypothetical protein
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6566.1.S1_at--1007--10171Chr02:22422446..22422470 (25 bp)
TATACCAGACGTGATATCCAAGTAG
LOC_Os02g37090
Os.6566.1.S1_at--293--6071Chr02:22422499..22422523 (25 bp)
GAGTTCAAGTTACAGCGATAGCCAG
LOC_Os02g37090
Os.6566.1.S1_at--1049--5931Chr02:22422532..22422556 (25 bp)
GAGCAGACCAACTCTTTGGTGCGGA
LOC_Os02g37090
Os.6566.1.S1_at--22--9471Chr02:22422570..22422594 (25 bp)
TCTGGATGCTATTCTGCCGCCGGTA
LOC_Os02g37090
Os.6566.1.S1_at--50--1651Chr02:22422609..22422633 (25 bp)
AGCCCGGGAACTATTCTCATTGTGG
LOC_Os02g37090
Os.6566.1.S1_at--1104--7651Chr02:22422672..22422696 (25 bp)
GGGATGTGACTCCATTATCATGCAA
LOC_Os02g37090
Os.6566.1.S1_at--364--1211Chr02:22422697..22422721 (25 bp)
AGTTCCTAACCATGTGACAGACTTG
LOC_Os02g37090
Os.6566.1.S1_at--207--5351Chr02:22422758..22422782 (25 bp)
GAAGATTCTTCCCTCCAACGAGTAG
LOC_Os02g37090
Os.6566.1.S1_at--362--4111Chr02:22422841..22422865 (25 bp)
CGAATTCTAGGAGTACTTGTGTGCT
LOC_Os02g37090
Os.6566.1.S1_at--529--7031Chr02:22422884..22422908 (25 bp)
GTACAGTGCTCTTTTCATATTTTGC
LOC_Os02g37090
Os.6566.1.S1_at--168--3231Chr02:22422990..22423014 (25 bp)
CAAGTCCTATGCATATCCGTGAAAA
LOC_Os02g37090
Target Sequence 
TATACCAGACGTGATATCCAAGTAGATTACGAAATGGAATTATCTATGTAGAGGAGTTCAAGTTACAGCGATAGCCAGAG
ACAGCAGAGCAGACCAACTCTTTGGTGCGGATGGGTGCGGCAGTTCTGGATGCTATTCTGCCGCCGGTAGTCTCACCTAC
ACCAGCCCGGGAACTATTCTCATTGTGGACTGGTGGGGGAGGATTAAAGATTAGATCCAGAGAGAAGGGATGTGACTCCA
TTATCATGCAAAGTTCCTAACCATGTGACAGACTTGGTAAGGAAAGAACGCAATGCGAGGGTCTTCANGAGATGAAGATT
CTTCCCTCCAACGAGTAGCAGGAAAAATCATCATTGATGAGCTTCACNGTATAGCGGTATAGGAGTACTTGTGAGGACGA
ATTCTAGGAGTACTTGTGTGCTNCAGCATTGTCCCGAGCTGTACAGTGCTCTTTTCATATTTTGCTGCTCTGTANATGCT
GTTGCCTGTTGGTTANTTGCCACTCTCTCTCGCCNGTGACCCTTTTTTATTAATACAAAATGATATGCAAGTCCTATGCA
TATCCGTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis