Browse Element(s) Details


Os.14337.1.S1_at

Description gb:AK071553.1
DB_XREF= gi:32981576
TID=Os.14337.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.14337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105G15, full insert sequence.
FL= gb:AK071553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3708011/11ASC1-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein
LOC_Os02g37070Os.11272.1.S1_at2/112+22395614..22395856hypothetical protein
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14337.1.S1_at--748--10331Chr02:22402595..22402619 (25 bp)
TTTCACTACTTGTTCTTCACATATA
LOC_Os02g37080
Os.14337.1.S1_at--713--6511Chr02:22402558..22402582 (25 bp)
GATATATCGGATGCTTGTGAGACAA
LOC_Os02g37080
Os.14337.1.S1_at--118--2652Chr03:24479166..24479209 (24 bp)
AACCATCTGGTTTCTATCTTCTCAT
NONE
Os.14337.1.S1_at--582--3651Chr02:22402249..22402273 (25 bp)
CTTCTCATGATGCTAGGAACGCCAA
LOC_Os02g37080
Os.14337.1.S1_at--836--8171Chr02:22402234..22402258 (25 bp)
GGAACGCCAATATCTCAGCTTATGA
LOC_Os02g37080
Os.14337.1.S1_at--1070--8851Chr02:22402212..22402236 (25 bp)
TGATGAATTCTTTTCCTGGATGAGG
LOC_Os02g37080
Os.14337.1.S1_at--508--611Chr02:22402148..22402172 (25 bp)
ATGCGAATTCGCTACAGAGCCGAGC
LOC_Os02g37080
Os.14337.1.S1_at--17--9591Chr02:22402121..22402145 (25 bp)
TCATTTCCTCTGTCCCGGTAGGATA
LOC_Os02g37080
Os.14337.1.S1_at--457--10131Chr02:22402077..22402101 (25 bp)
TATGCACGAGAGGTCGCACTCCGAA
LOC_Os02g37080
Os.14337.1.S1_at--571--10571Chr02:22402021..22402045 (25 bp)
TTCTTTGACTTCTCAGTTCTTGTAG
LOC_Os02g37080
Os.14337.1.S1_at--811--6471Chr02:22401893..22401917 (25 bp)
GATACGTATACCATATGACCATTAT
LOC_Os02g37080
Target Sequence 
TTTCACTACTTGTTCTTCACATATATTGGTGGGTTCTGATATATCGGATGCTTGTGAGACAAATCAAGACAAGAAATGTT
GGAGATGATGTTCGATCTGACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTCTATCTTCTC
ATGATGCTAGGAACGCCAATATCTCAGCTTATGATGAATTCTTTTCCTGGATGAGGGAACATGTGCAGATTGTTTGGATA
TGAGTATTATTGTTCATGCGAATTCGCTACAGAGCCGAGCAATCATTTCCTCTGTCCCGGTAGGATATTTGTGTGTTGAT
GCATTGTATGCACGAGAGGTCGCACTCCGAACCTTCCCTCTGGCTGATCATCACAGAAGATATTCTTTGACTTCTCAGTT
CTTGTAGAGATTGAAATGTACCGAAAGGTGTACCAGTAGCGAAAATGTAGTATATAATTCCAGAAATGCAGTCTACATAT
ACTAAAACCCTTTCTTGGTCATTTGTGTAAGATACGTATACCATATGACCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis