Browse Element(s) Details


OsAffx.12381.1.S1_at

Description tigr:9630.m03543
TID=OsAffx.12381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphatidylinositolglycan class N
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3705011/11Phosphatidylinositolglycan class N family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein
LOC_Os02g37070Os.11272.1.S1_at2/112+22395614..22395856hypothetical protein
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12381.1.S1_at--1097--7151Chr02:22381946..22381970 (25 bp)
GTGCTTTTGCAATGGTACTTATGGG
LOC_Os02g37050
OsAffx.12381.1.S1_at--1078--7931Chr02:22381973..22381997 (25 bp)
GGATATTTGTGGAATCTGCCAACTT
LOC_Os02g37050
OsAffx.12381.1.S1_at--67--3831Chr02:22381988..22382012 (25 bp)
CTGCCAACTTGTATTGCTCAGAACA
LOC_Os02g37050
OsAffx.12381.1.S1_at--593--2431Chr02:22382012..22382036 (25 bp)
AAAATGGTTCTGCACGCCGTAGTAG
LOC_Os02g37050
OsAffx.12381.1.S1_at--443--8031Chr02:22382043..22382067 (25 bp)
GGAGGGCTCAATTTTCGGCTATGAT
LOC_Os02g37050
OsAffx.12381.1.S1_at--469--2531Chr02:22382081..22382105 (25 bp)
AACTATCTGATCTACGAATCCCTCT
LOC_Os02g37050
OsAffx.12381.1.S1_at--1000--5251Chr02:22382096..22382212 (25 bp)
GAATCCCTCTGTTATTTACGATCTT
LOC_Os02g37050
OsAffx.12381.1.S1_at--1159--9551Chr02:22382209..22382233 (25 bp)
TCTTATTTAATGTTGCGTTCTTTGG
LOC_Os02g37050
OsAffx.12381.1.S1_at--615--191Chr02:22382268..22382292 (25 bp)
ATTTCATCTGTGTACCGGTTCATTA
LOC_Os02g37050
OsAffx.12381.1.S1_at--982--171Chr02:22382297..22382421 (25 bp)
ATTTAGTCCGTTCCTGATGGCAGCA
LOC_Os02g37050
OsAffx.12381.1.S1_at--954--8251Chr02:22382415..22382439 (25 bp)
GGCAGCACTTCTTATCTTCAAATTG
LOC_Os02g37050
Target Sequence 
GTGCTTTTGCAATGGTACTTATGGGATGGATATTTGTGGAATCTGCCAACTTGTATTGCTCAGAACAAAATGGTTCTGCA
CGCCGTAGTAGCATTGTGGAGGGCTCAATTTTCGGCTATGATGAAAGATGCTTACAACTATCTGATCTACGAATCCCTCT
GTTATTTACGATCTTATTTAATGTTGCGTTCTTTGGAACTGGGAATTTTGCGAGTATTGCAAGCTTTGAAATTTCATCTG
TGTACCGGTTCATTACAATATTTAGTCCGTTCCTGATGGCAGCACTTCTTATCTTCAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis