Browse Element(s) Details


OsAffx.12382.1.S1_at

Description tigr:9630.m03544
TID=OsAffx.12382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3706011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein
LOC_Os02g37070Os.11272.1.S1_at2/112+22395614..22395856hypothetical protein
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12382.1.S1_at--800--5331Chr02:22384885..22384909 (25 bp)
GAAGTACGCGCAGATCTGCGTCACC
LOC_Os02g37060
OsAffx.12382.1.S1_at--182--7811Chr02:22384924..22384948 (25 bp)
GGTCTGCCACAACTGAGCTGTGGTT
LOC_Os02g37060
OsAffx.12382.1.S1_at--636--8751Chr02:22384983..22385007 (25 bp)
TGTACGGTTTTTTAATCTCCTGTCT
LOC_Os02g37060
OsAffx.12382.1.S1_at--191--5891Chr02:22385019..22385043 (25 bp)
GAGCTCTGATTAGACTGTCGCCATG
LOC_Os02g37060
OsAffx.12382.1.S1_at--1130--6131Chr02:22385092..22385116 (25 bp)
GAGGTGAAACCGTACGTTCTCTTGT
LOC_Os02g37060
OsAffx.12382.1.S1_at--736--1871Chr02:22385105..22385129 (25 bp)
ACGTTCTCTTGTTTCGTTCGTTGCG
LOC_Os02g37060
OsAffx.12382.1.S1_at--387--10711Chr02:22385125..22385149 (25 bp)
TTGCGTTGGCGTTGCACATGCATTC
LOC_Os02g37060
OsAffx.12382.1.S1_at--362--9071Chr02:22385143..22385167 (25 bp)
TGCATTCACGCATGTATCGTAGGAC
LOC_Os02g37060
OsAffx.12382.1.S1_at--303--6911Chr02:22385156..22385180 (25 bp)
GTATCGTAGGACATGCATTGGCTGA
LOC_Os02g37060
OsAffx.12382.1.S1_at--70--31Chr02:22385172..22385196 (25 bp)
ATTGGCTGACGCATTCACGCATAAA
LOC_Os02g37060
OsAffx.12382.1.S1_at--778--5771Chr02:22385179..22385203 (25 bp)
GACGCATTCACGCATAAATCGCAGT
LOC_Os02g37060
Target Sequence 
GAAGTACGCGCAGATCTGCGTCACCATGCCCACCGCCAAGGTCTGCCACAACTGAGCTGTGGTTAGAGGGAAGAGGGGCT
ATGGATGCAGTAAATACATGTACGGTTTTTTAATCTCCTGTCTATTAAAAATTCGAGCTCTGATTAGACTGTCGCCATGG
ATGGCATCGAAATCAAGTTGTTGTAATATGATGATCATTGCGAATTCGAGGTGAAACCGTACGTTCTCTTGTTTCGTTCG
TTGCGTTGGCGTTGCACATGCATTCACGCATGTATCGTAGGACATGCATTGGCTGACGCATTCACGCATAAATCGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis