Browse Element(s) Details


Os.50221.1.S1_at

Description gb:AK067560.1
DB_XREF= gi:32977578
TID=Os.50221.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111H11, full insert sequence.
FL= gb:AK067560.1 gb:AK120170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4577011/11S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os02g370501/11Phosphatidylinositolglycan class N family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45740OsAffx.13369.1.S1_at11/113+25786179..25787958Transferase family protein, expressed
LOC_Os03g45744OsAffx.5489.1.S1_at2/113+25791902..25792497hypothetical protein
LOC_Os03g45750Os.53245.1.S1_at11/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_x_at6/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_at5/113+25797585..25800118expressed protein
LOC_Os03g45760Os.51262.1.S1_at11/113+25800320..25803231expressed protein
LOC_Os03g45770Os.50221.1.S1_at11/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45770OsAffx.31448.1.S1_at1/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45779Os.38196.1.A1_at11/113+25813713..25815145expressed protein
LOC_Os03g45790NANA3+25816601..25816906expressed protein
LOC_Os03g45800NANA3+25820346..25820702Auxin responsive protein
LOC_Os03g45810OsAffx.23366.2.S1_s_at1/113+25821990..25825596transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.7362.1.S1_x_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820Os.46314.3.S1_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.265.1.S1_at1/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50221.1.S1_at--677--6231Chr03:25805364..25805388 (25 bp)
GATGGCATAGTATCTTTCTTCTCTA
LOC_Os03g45770
Os.50221.1.S1_at--609--6031Chr03:25805333..25805357 (25 bp)
GAGATGTCCGTGATCATGGTCAAGA
LOC_Os03g45770
Os.50221.1.S1_at--350--131Chr03:25805309..25805333 (25 bp)
ATTACACTGATCCACCTCGAAATGA
LOC_Os03g45770
Os.50221.1.S1_at--696--2731Chr03:25805182..25805206 (25 bp)
AAGCAAGCTGATATGTTGCCCGCTC
LOC_Os03g45770
Os.50221.1.S1_at--1095--4931Chr03:25805131..25805155 (25 bp)
GCATTGCAGACTTGTGTCGGCTGAA
LOC_Os03g45770
Os.50221.1.S1_at--403--5491Chr03:25805109..25805133 (25 bp)
GAACATACCGCGTTAAGCTGCAGAA
LOC_Os03g45770
Os.50221.1.S1_at--277--7912Chr02:22377147..22377252 (24 bp)
GGTTGCTGAATTGTACCTACTCATG
LOC_Os02g37050
Os.50221.1.S1_at--853--671Chr03:25805027..25805051 (25 bp)
ATGACATGTGTACATTCCCTACCGT
LOC_Os03g45770
Os.50221.1.S1_at--738--11Chr03:25805014..25805038 (25 bp)
ATTCCCTACCGTCTGAATGGGCAAG
LOC_Os03g45770
Os.50221.1.S1_at--69--1431Chr03:25804971..25804995 (25 bp)
AGAAATGTTCTTCAGCTCATCTCAT
LOC_Os03g45770
Os.50221.1.S1_at--380--4831Chr03:25804957..25804981 (25 bp)
GCTCATCTCATTTTGCTTTTTCTGT
LOC_Os03g45770
Target Sequence 
GATGGCATAGTATCTTTCTTCTCTATGTTTAGAGATGTCCGTGATCATGGTCAAGATTACACTGATCCACCTCGAAATGA
AAATGGTCAGGTAACATAGAAAATATAGGAAGGAAAACAGAAGGGAATTGCAGACGAAGAACACTGGTGGAGGGCGGTTG
GGCGAAAGTTGCCTATGTTATTAAGCAAGCTGATATGTTGCCCGCTCCACCATCAAAGGATAATGACGAATATGCATTGC
AGACTTGTGTCGGCTGAACATACCGCGTTAAGCTGCAGAATCTGTTAATTTCTTTTCTTTTTCGTTGTTGAGTAAGGTTG
CTGAATTGTACCTACTCATGACATGTGTACATTCCCTACCGTCTGAATGGGCAAGCCCGGCCTATTNCTTGTACAGAAAT
GTTCTTCAGCTCATCTCATTTTGCTTTTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis