Browse Element(s) Details


OsAffx.5489.1.S1_at

Description gb:NM_187330.1
DB_XREF= gi:34901745
GEN=OJ1058_B11.1
TID=OsAffx.5489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1058_B11.1 (OJ1058_B11.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g457442/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific
LOC_Os03g45740OsAffx.13369.1.S1_at11/113+25786179..25787958Transferase family protein, expressed
LOC_Os03g45744OsAffx.5489.1.S1_at2/113+25791902..25792497hypothetical protein
LOC_Os03g45750Os.53245.1.S1_at11/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_x_at6/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_at5/113+25797585..25800118expressed protein
LOC_Os03g45760Os.51262.1.S1_at11/113+25800320..25803231expressed protein
LOC_Os03g45770Os.50221.1.S1_at11/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45770OsAffx.31448.1.S1_at1/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45779Os.38196.1.A1_at11/113+25813713..25815145expressed protein
LOC_Os03g45790NANA3+25816601..25816906expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5489.1.S1_at--299--3811Chr07:18462250..18462274 (25 bp)
CTCCCGCAGACAGGGCGTATGTCAT
NONE
OsAffx.5489.1.S1_at--449--2131Chr07:18462259..18462283 (25 bp)
ACAGGGCGTATGTCATTGAACTCCG
NONE
OsAffx.5489.1.S1_at--495--8371Chr07:18462263..18462287 (25 bp)
GGCGTATGTCATTGAACTCCGAGTT
NONE
OsAffx.5489.1.S1_at--73--6931Chr07:18462266..18462290 (25 bp)
GTATGTCATTGAACTCCGAGTTGAG
NONE
OsAffx.5489.1.S1_at--1146--3793Chr07:18462279..18462303 (25 bp)
CTCCGAGTTGAGGATGGTGTCGAAC
NONE
OsAffx.5489.1.S1_at--210--8012Chr07:18462290..18462314 (25 bp)
GGATGGTGTCGAACTCAACGACGAA
NONE
OsAffx.5489.1.S1_at--1019--9351Chr07:18462298..18462419 (25 bp)
TCGAACTCAACGACGAAGAGCCCGC
NONE
OsAffx.5489.1.S1_at--152--2753Chr07:18462462..18462578 (25 bp)
AAGAACTAGGTTTTGGAGGCAGTCA
NONE
OsAffx.5489.1.S1_at--1157--3692Chr07:18462467..18462583 (25 bp)
CTAGGTTTTGGAGGCAGTCAGCGAC
NONE
OsAffx.5489.1.S1_at--753--3352Chr07:18462594..18462618 (25 bp)
CACGCGCGGCTTCGAGAAAAATTCG
NONE
OsAffx.5489.1.S1_at--64--4693Chr11:9259655..9259678 (24 bp)
GCGGCTTCGAGAAAAATTCGCTTTG
NONE
Target Sequence 
CTCCCGCAGACAGGGCGTATGTCATTGAACTCCGAGTTGAGGATGGTGTCGAACTCAACGACGAAGAGCCCGCCGGCGCC
GCCTCCCGCAAACCTGACGAATTGGGGATTTTCGGAAGAACTAGGTTTTGGAGGCAGTCAGCGACAGTGGTCGCCCACGC
GCGGCTTCGAGAAAAATTCGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis