Browse Element(s) Details


OsAffx.13369.1.S1_at

Description tigr:9631.m04431
TID=OsAffx.13369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative hypersensitivity-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4574011/11Transferase family protein, expressed
LOC_Os08g061101/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45730Os.14665.1.S1_at11/113+25759470..25764976Zinc knuckle family protein, expressed
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific
LOC_Os03g45740OsAffx.13369.1.S1_at11/113+25786179..25787958Transferase family protein, expressed
LOC_Os03g45744OsAffx.5489.1.S1_at2/113+25791902..25792497hypothetical protein
LOC_Os03g45750Os.53245.1.S1_at11/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_x_at6/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_at5/113+25797585..25800118expressed protein
LOC_Os03g45760Os.51262.1.S1_at11/113+25800320..25803231expressed protein
LOC_Os03g45770Os.50221.1.S1_at11/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45770OsAffx.31448.1.S1_at1/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0042752biological_processregulation of circadian rhythm
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13369.1.S1_at--55--10091Chr03:25787358..25787382 (25 bp)
TAGGCAGTCATATACTACGTTCGAA
LOC_Os03g45740
OsAffx.13369.1.S1_at--729--8631Chr03:25787423..25787447 (25 bp)
TGGGTTATTCTCTCGACCAACATGT
LOC_Os03g45740
OsAffx.13369.1.S1_at--916--771Chr03:25787444..25787468 (25 bp)
ATGTGCGTCTCATGTTCACCTTAAA
LOC_Os03g45740
OsAffx.13369.1.S1_at--273--1731Chr03:25787461..25787485 (25 bp)
ACCTTAAACTCTCGTGGCAACTGGA
LOC_Os03g45740
OsAffx.13369.1.S1_at--173--10471Chr03:25787511..25787535 (25 bp)
TTACTACGGTTGTTGTCTCGTCTTT
LOC_Os03g45740
OsAffx.13369.1.S1_at--227--8931Chr03:25787559..25787583 (25 bp)
TGACTTGTGCGGAAACCCTCTAGGG
LOC_Os03g45740
OsAffx.13369.1.S1_at--722--2611Chr03:25787572..25787596 (25 bp)
AACCCTCTAGGGTATGCACTTGACC
LOC_Os03g45740
OsAffx.13369.1.S1_at--1110--5091Chr03:25787587..25787611 (25 bp)
GCACTTGACCTTGTTCGTAAGGCCA
LOC_Os03g45740
OsAffx.13369.1.S1_at--1011--371Chr03:25787640..25787664 (25 bp)
ATCAACTGTGGACTTTCTAGCATCA
LOC_Os03g45740
OsAffx.13369.1.S1_at--1138--5171Chr03:25787666..25787690 (25 bp)
GCAAGTGGCCATCTCTTGTTGTTGA
LOC_Os03g45740
OsAffx.13369.1.S1_at--411--3432Chr08:3363058..3363190 (24 bp)
CAGAGATCTCTGTTTGGTCAATGAA
LOC_Os08g06110
Target Sequence 
TAGGCAGTCATATACTACGTTCGAATTAATAGCTGCGGCGGTATGGAAATGCCGCACCGCTGCATTGGGTTATTCTCTCG
ACCAACATGTGCGTCTCATGTTCACCTTAAACTCTCGTGGCAACTGGAAACGCAACCCACCAATCCCACAAGGTTACTAC
GGTTGTTGTCTCGTCTTTCCTGTTGCAGAAACAACGGTGGCTGACTTGTGCGGAAACCCTCTAGGGTATGCACTTGACCT
TGTTCGTAAGGCCAAATTGGAGGTGACAGATGAATACGTTAAATCAACTGTGGACTTTCTAGCATCACGCAAGTGGCCAT
CTCTTGTTGTTGATCGAACATACATTGTATCAGACATAACATCCGTTGGAGATGACAAATTAGACTTTGGGTGGGGGAAG
CGTATGGGTGGTGGCATACCAATGGCTGGAGACATCATGTCCAGGCTAATAAGCTATTTTACCAAGTGCAAGAATGCTGA
TGGTGAGGACTGTATTGTAGTGCCAATGTACTTGCCAAGCATAACCATGGATAGATTCGCAGCAGAGATCTCTGTTTGGT
CAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis