Browse Element(s) Details


OsAffx.3523.1.S1_x_at

Description tigr:9631.m04432
TID=OsAffx.3523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g457506/11expressed protein
LOC_Os05g279801/11LOB domain protein 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific
LOC_Os03g45740OsAffx.13369.1.S1_at11/113+25786179..25787958Transferase family protein, expressed
LOC_Os03g45744OsAffx.5489.1.S1_at2/113+25791902..25792497hypothetical protein
LOC_Os03g45750Os.53245.1.S1_at11/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_x_at6/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_at5/113+25797585..25800118expressed protein
LOC_Os03g45760Os.51262.1.S1_at11/113+25800320..25803231expressed protein
LOC_Os03g45770Os.50221.1.S1_at11/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45770OsAffx.31448.1.S1_at1/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45779Os.38196.1.A1_at11/113+25813713..25815145expressed protein
LOC_Os03g45790NANA3+25816601..25816906expressed protein
LOC_Os03g45800NANA3+25820346..25820702Auxin responsive protein
LOC_Os03g45810OsAffx.23366.2.S1_s_at1/113+25821990..25825596transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0010199biological_processorgan boundary specification
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3523.1.S1_x_at--181--10651Chr03:25797974..25797998 (25 bp)
TTCCCGCCGGGCGAGCCGCACAAGT
LOC_Os03g45750
OsAffx.3523.1.S1_x_at--983--3971Chr03:25797981..25798005 (25 bp)
CGGGCGAGCCGCACAAGTTCGCCAA
LOC_Os03g45750
OsAffx.3523.1.S1_x_at--615--4552Chr03:25798023..25798047 (25 bp)
GCGCCAGCAATGTCAGCAAGCTCCT
LOC_Os03g45750
OsAffx.3523.1.S1_x_at--662--5151NONE
GCAAGCTCCTCCAGGAGATACCGGT
NONE
OsAffx.3523.1.S1_x_at--192--3211NONE
CAAGCTCCTCCAGGAGATACCGGTG
NONE
OsAffx.3523.1.S1_x_at--863--2671NONE
AAGCTCCTCCAGGAGATACCGGTGC
NONE
OsAffx.3523.1.S1_x_at--344--1591NONE
AGCTCCTCCAGGAGATACCGGTGCA
NONE
OsAffx.3523.1.S1_x_at--540--4791NONE
GCTCCTCCAGGAGATACCGGTGCAG
NONE
OsAffx.3523.1.S1_x_at--378--9271Chr03:25799450..25799469 (20 bp)
TCCTCCAGGAGATACCGGTGCAGCA
LOC_Os03g45750
OsAffx.3523.1.S1_x_at--906--3811Chr03:25799450..25799471 (22 bp)
CTCCAGGAGATACCGGTGCAGCACA
LOC_Os03g45750
OsAffx.3523.1.S1_x_at--22--3491Chr03:25799450..25799474 (25 bp)
CAGGAGATACCGGTGCAGCACAGGG
LOC_Os03g45750
Target Sequence 
TTCCCGCCGGGCGAGCCGCACAAGTTCGCCAACGTCCACAAGGTCTTCGGCGCCAGCAATGTCAGCAAGCTCCTCCAGGA
GATACCGGTGCAGCACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3523.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis