Browse Element(s) Details


OsAffx.7165.1.S1_at

Description tigr:9639.m01923
TID=OsAffx.7165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g204909/11hypothetical protein
LOC_Os03g457341/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20460NANA11+11820914..11827533retrotransposon protein, putative, unclassified
LOC_Os11g20470Os.46012.2.S1_x_at10/1111+11831026..11836724retrotransposon protein, putative, unclassified
LOC_Os11g20470Os.46012.3.S1_x_at7/1111+11831026..11836724retrotransposon protein, putative, unclassified
LOC_Os11g20470Os.27088.1.A1_x_at6/1111+11831026..11836724retrotransposon protein, putative, unclassified
LOC_Os11g20480OsAffx.12862.1.S1_x_at1/1111+11839879..11844533hypothetical protein
LOC_Os11g20490OsAffx.7165.1.S1_at9/1111+11848050..11851141hypothetical protein
LOC_Os11g20500NANA11+11856439..11856822hypothetical protein
LOC_Os11g20510OsAffx.22699.1.S1_x_at2/1111+11858988..11865206retrotransposon protein, putative, unclassified
LOC_Os11g20510OsAffx.18275.1.S1_x_at1/1111+11858988..11865206retrotransposon protein, putative, unclassified
LOC_Os11g20520NANA11+11868983..11871953retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7165.1.S1_at--370--7691Chr11:11851083..11851107 (25 bp)
GGGTCAATCTAAGAGCCGCTGAACG
LOC_Os11g20490
OsAffx.7165.1.S1_at--196--8331Chr11:11851047..11851071 (25 bp)
GGCTGCGAGGTGTGCTACCAGTCTA
LOC_Os11g20490
OsAffx.7165.1.S1_at--1072--9971Chr11:11851032..11851056 (25 bp)
TACCAGTCTACCACTACCAGAAGAA
LOC_Os11g20490
OsAffx.7165.1.S1_at--486--1711Chr11:11851017..11851041 (25 bp)
ACCAGAAGAACATCACCGTGGAGGA
LOC_Os11g20490
OsAffx.7165.1.S1_at--708--3991NONE
CGTGGAGGACTACGCCAGCAGCCAT
NONE
OsAffx.7165.1.S1_at--379--3411Chr11:11849493..11849517 (25 bp)
CAGCAGCCATGCAACTTCAGGTTAC
LOC_Os11g20490
OsAffx.7165.1.S1_at--421--2051Chr11:11849480..11849504 (25 bp)
ACTTCAGGTTACACTCAGAGGTCCA
LOC_Os11g20490
OsAffx.7165.1.S1_at--330--1331Chr11:11849464..11849488 (25 bp)
AGAGGTCCAAGGCTGTAATCAAGAA
LOC_Os11g20490
OsAffx.7165.1.S1_at--234--2352Chr04:6929671..6929692 (22 bp)
AAAGCAGCATGGTCACTATTCTACT
NONE
OsAffx.7165.1.S1_at--104--6371NONE
GATCCAGCATAAGTGCACTTCGAAT
NONE
OsAffx.7165.1.S1_at--204--10632Chr11:11848089..11848110 (22 bp)
TTCGAATAAGGTTCATCTGCACCGG
LOC_Os11g20490
Target Sequence 
GGGTCAATCTAAGAGCCGCTGAACGAGATGGTCGGAGGCTGCGAGGTGTGCTACCAGTCTACCACTACCAGAAGAACATC
ACCGTGGAGGACTACGCCAGCAGCCATGCAACTTCAGGTTACACTCAGAGGTCCAAGGCTGTAATCAAGAAAGAAAAGCA
GCATGGTCACTATTCTACTGTAAATATGATCCAGCATAAGTGCACTTCGAATAAGGTTCATCTGCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis