Browse Element(s) Details


OsAffx.12862.1.S1_x_at

Description tigr:9631.m01409
TID=OsAffx.12862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1466911/11Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g204801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14640OsAffx.3243.1.S1_at11/113+7938552..7940292expressed protein
LOC_Os03g14650NANA3+7944733..7945173hypothetical protein
LOC_Os03g14669OsAffx.12862.1.S1_x_at11/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14669Os.12037.1.S1_at1/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed
LOC_Os03g14700OsAffx.25088.1.S1_at11/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14700OsAffx.9561.1.S1_at10/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14710OsAffx.12863.1.S1_s_at11/113+7977212..7979387Protein kinase domain containing protein, expressed
LOC_Os03g14720Os.7650.1.S1_at11/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14720OsAffx.8858.1.S1_x_at1/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12862.1.S1_x_at--433--1292Chr11:11843761..11844230 (25 bp)
AGATCCACGAGCTGACAGGTGAGAG
LOC_Os11g20480
OsAffx.12862.1.S1_x_at--52--591Chr03:7959912..7959936 (25 bp)
ATCCACGAGCTGACAGGTGAGAGGA
LOC_Os03g14669
OsAffx.12862.1.S1_x_at--106--9431Chr03:7959884..7959908 (25 bp)
TCGTGAAGACGAAGGATGCAGAGCT
LOC_Os03g14669
OsAffx.12862.1.S1_x_at--891--4111Chr03:7959875..7959899 (25 bp)
CGAAGGATGCAGAGCTGGAGCTGGT
LOC_Os03g14669
OsAffx.12862.1.S1_x_at--118--10631Chr03:7959837..7959861 (25 bp)
TTCGTGCGGTGCAACAAGGTGCTCG
LOC_Os03g14669
OsAffx.12862.1.S1_x_at--461--9411Chr03:7959836..7959860 (25 bp)
TCGTGCGGTGCAACAAGGTGCTCGA
LOC_Os03g14669
OsAffx.12862.1.S1_x_at--957--9811Chr03:7959757..7959781 (25 bp)
TAACAGAGAGGTGATGAGTTGGCAT
LOC_Os03g14669
OsAffx.12862.1.S1_x_at--477--2491Chr03:7959756..7959780 (25 bp)
AACAGAGAGGTGATGAGTTGGCATC
LOC_Os03g14669
OsAffx.12862.1.S1_x_at--504--1333Chr04:16305765..16305789 (25 bp)
AGAGGTGATGAGTTGGCATCCTGAC
NONE
OsAffx.12862.1.S1_x_at--43--1053Chr04:16305763..16305787 (25 bp)
AGGTGATGAGTTGGCATCCTGACAT
NONE
OsAffx.12862.1.S1_x_at--738--9651Chr03:7959697..7959721 (25 bp)
TCAGCGGCTACGTCGGATAAAACTG
LOC_Os03g14669
Target Sequence 
AGATCCACGAGCTGACAGGTGAGAGGAGCGTCGTGAAGACGAAGGATGCAGAGCTGGAGCTGGTGATCCCGCCGGTGTTC
GTGCGGTGCAACAAGGTGCTCGACGCTGGGGAGCAGAAGGAGGGAGAGAGAGAAAGAGAAAGGGGGAGGAGGGGAAATAA
CAGAGAGGTGATGAGTTGGCATCCTGACATGTGGGGCCACGTGGGTCTCCCGCTGACTCAGCGGCTACGTCGGATAAAAC
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12862.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis