Browse Element(s) Details


OsAffx.3243.1.S1_at

Description tigr:9631.m01405
TID=OsAffx.3243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1464011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14620NANA3+7917543..7919012transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g14630Os.12271.1.S1_at11/113+7925521..7926233Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g14640OsAffx.3243.1.S1_at11/113+7938552..7940292expressed protein
LOC_Os03g14650NANA3+7944733..7945173hypothetical protein
LOC_Os03g14669OsAffx.12862.1.S1_x_at11/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14669Os.12037.1.S1_at1/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3243.1.S1_at--827--3831Chr03:7938614..7938638 (25 bp)
CTGCTGGTTCAAGAGCTGGTTGCCA
LOC_Os03g14640
OsAffx.3243.1.S1_at--225--391Chr03:7938665..7938689 (25 bp)
ATCAGCTAACGGCAGCGGGCACTTG
LOC_Os03g14640
OsAffx.3243.1.S1_at--538--2931Chr03:7938876..7938900 (25 bp)
AAGGCAGAGTTCATTGCCCGTTTGC
LOC_Os03g14640
OsAffx.3243.1.S1_at--717--4531Chr03:7938891..7938915 (25 bp)
GCCCGTTTGCTTGCCATTGTTGGAA
LOC_Os03g14640
OsAffx.3243.1.S1_at--1087--10431Chr03:7939208..7939228 (21 bp)
TTAGGCCTGATAGCCAGCTGTCTAG
LOC_Os03g14640
OsAffx.3243.1.S1_at--381--5411Chr03:7939263..7939287 (25 bp)
GAAGCGTCAAGCTACAGGACACCAA
LOC_Os03g14640
OsAffx.3243.1.S1_at--425--6452Chr03:7940113..7940137 (25 bp)
GATCACTATATGTCCGAATCCGCTT
LOC_Os03g14640
OsAffx.3243.1.S1_at--125--5531Chr03:7940170..7940194 (25 bp)
GAAAACCGTGTCATGTTCTCCGAGG
LOC_Os03g14640
OsAffx.3243.1.S1_at--99--6731Chr03:7940184..7940208 (25 bp)
GTTCTCCGAGGATTCCATCTACATA
LOC_Os03g14640
OsAffx.3243.1.S1_at--823--1591Chr03:7940211..7940235 (25 bp)
AGCTCCTGACTGTGATGGGTATTCC
LOC_Os03g14640
OsAffx.3243.1.S1_at--298--811Chr03:7940225..7940249 (25 bp)
ATGGGTATTCCTCCGACCGTGAGAA
LOC_Os03g14640
Target Sequence 
CTGCTGGTTCAAGAGCTGGTTGCCAAGAGCAACATTAAGGCACACACCAAGATCAGCTAACGGCAGCGGGCACTTGGGAG
GCGGCGCTGGTGATGGTGTCGGGACCGGAGTTGGTGCGGGCGTCGGTGGCACCACCAGGGCTGGTGCTGGGGCTGGAGTT
TCGGTCGGGGTTGGCGCCGTGGCTAGGCATGGGCTATGGCCATGTAGCACTAGTCCCCCGTTGACGGCAGAAGCCAAGAC
CAAAATAACTGATGCAAAGAACAAGGCAGAGTTCATTGCCCGTTTGCTTGCCATTGTTGGAATATGTGTGTTTGATGCTT
TTAGGCCTGATAGCCAGCTGTCTAGCACAGCGATGCTATACACAGCTGGTAGTCGATTAGAAGCGTCAAGCTACAGGACA
CCAAGATCAAAGCTATGGTATGATCACTATATGTCCGAATCCGCTTTGTTTTCACCCCTAGCTGCAGTCGACAGCGAAGA
AAACCGTGTCATGTTCTCCGAGGATTCCATCTACATAAGAGCTCCTGACTGTGATGGGTATTCCTCCGACCGTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis