Browse Element(s) Details


Os.12037.1.S1_at

Description gb:CB619048
DB_XREF= gi:29614035
DB_XREF=OSIIEa03F14.r
CLONE=OSIIEa03F14
TID=Os.12037.1
CNT=21
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12037 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201152.1 (A.thaliana) transcription factor Hap5a-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g146691/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14640OsAffx.3243.1.S1_at11/113+7938552..7940292expressed protein
LOC_Os03g14650NANA3+7944733..7945173hypothetical protein
LOC_Os03g14669OsAffx.12862.1.S1_x_at11/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14669Os.12037.1.S1_at1/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed
LOC_Os03g14700OsAffx.25088.1.S1_at11/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14700OsAffx.9561.1.S1_at10/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14710OsAffx.12863.1.S1_s_at11/113+7977212..7979387Protein kinase domain containing protein, expressed
LOC_Os03g14720Os.7650.1.S1_at11/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14720OsAffx.8858.1.S1_x_at1/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12037.1.S1_at--777--5051Chr03:7956287..7956311 (25 bp)
GCAGCAAGGTTTTGCAGGCCATGGC
LOC_Os03g14669
Os.12037.1.S1_at--488--5091Chr03:7956238..7956262 (25 bp)
GCACCTCCAAGCTCCGAATAGTGAT
NONE
Os.12037.1.S1_at--657--10111Chr03:7956207..7956231 (25 bp)
TATGGTTCCATGCATGCATCGCTGA
NONE
Os.12037.1.S1_at--69--4991Chr03:7956192..7956216 (25 bp)
GCATCGCTGAGGTGCTAGCTAGCTA
NONE
Os.12037.1.S1_at--549--1571Chr03:7956176..7956200 (25 bp)
AGCTAGCTACTATAGCTGCTCAAAT
NONE
Os.12037.1.S1_at--49--3091Chr03:7956154..7956178 (25 bp)
AATCAAATGCTCAATGTGTCGGTAA
NONE
Os.12037.1.S1_at--456--7391Chr03:7956120..7956144 (25 bp)
GTGGTACGTATTAACTTAACCGATG
NONE
Os.12037.1.S1_at--921--6991Chr03:7956096..7956120 (25 bp)
GTACGTAATGGACGCTCAAGCTAAT
NONE
Os.12037.1.S1_at--757--8731Chr03:7955994..7956018 (25 bp)
TGTAATTTCTTTTCCCGTTATGCTA
NONE
Os.12037.1.S1_at--334--6791Chr03:7955978..7956002 (25 bp)
GTTATGCTACTAATTGTGGACGCAC
NONE
Os.12037.1.S1_at--53--7511Chr03:7955963..7955987 (25 bp)
GTGGACGCACAAACCATTACCGGAA
NONE
Target Sequence 
GCAGCAAGGTTTTGCAGGCCATGGCGGTGCGGCAGCTNGCTTCCCTCCTGCACCTCCAAGCTCCGAATAGTGATGATCCA
TATGGTTCCATGCATGCATCGCTGAGGTGCTAGCTAGCTACTATAGCTGCTCAAATCAAATGCTCAATGTGTCGGTAATT
AATTAATGTGGTACGTATTAACTTAACCGATGTACGTAATGGACGCTCAAGCTAATTAAGGGATGTACAATTTACTAATT
AATTTAATTTGTAATATATAGCCGATTAACTAGCAANNNNANNCAGTACTATTTGTAATTTCTTTTCCCGTTATGCTACT
AATTGTGGACGCACAAACCATTACCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis