Browse Element(s) Details


OsAffx.9561.1.S1_at

Description gb:NM_190497.1
DB_XREF= gi:34908077
GEN=P0506B12.28
TID=OsAffx.9561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0506B12.28 (P0506B12.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1470010/11calcium-dependent lipid-binding protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14650NANA3+7944733..7945173hypothetical protein
LOC_Os03g14669OsAffx.12862.1.S1_x_at11/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14669Os.12037.1.S1_at1/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed
LOC_Os03g14700OsAffx.25088.1.S1_at11/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14700OsAffx.9561.1.S1_at10/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14710OsAffx.12863.1.S1_s_at11/113+7977212..7979387Protein kinase domain containing protein, expressed
LOC_Os03g14720Os.7650.1.S1_at11/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14720OsAffx.8858.1.S1_x_at1/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14730Os.27673.1.S1_at10/113+7990229..7991617esterase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9561.1.S1_at--446--9412Chr03:7973332..7973356 (25 bp)
TCGTCCTCAGCGCTAGTACAGCGGA
LOC_Os03g14700
OsAffx.9561.1.S1_at--864--9252Chr03:7973329..7973353 (25 bp)
TCCTCAGCGCTAGTACAGCGGAGGC
LOC_Os03g14700
OsAffx.9561.1.S1_at--718--1852Chr03:7973287..7973311 (25 bp)
ACGACGGTGGCGGAGACCTCTCGGA
LOC_Os03g14700
OsAffx.9561.1.S1_at--1011--8051NONE
GGAGACCTCTCGGATGAGCGGGCGA
NONE
OsAffx.9561.1.S1_at--848--7592Chr03:7972657..7972681 (25 bp)
GGGCACAGGCATGAAGGTCACGAAC
LOC_Os03g14700
OsAffx.9561.1.S1_at--239--932Chr03:7972651..7972675 (25 bp)
AGGCATGAAGGTCACGAACCCTGCG
LOC_Os03g14700
OsAffx.9561.1.S1_at--166--4992Chr03:7972649..7972673 (25 bp)
GCATGAAGGTCACGAACCCTGCGGA
LOC_Os03g14700
OsAffx.9561.1.S1_at--334--672Chr03:7972647..7972671 (25 bp)
ATGAAGGTCACGAACCCTGCGGACA
LOC_Os03g14700
OsAffx.9561.1.S1_at--664--5312Chr03:7972645..7972669 (25 bp)
GAAGGTCACGAACCCTGCGGACATT
LOC_Os03g14700
OsAffx.9561.1.S1_at--358--1032Chr03:7972643..7972667 (25 bp)
AGGTCACGAACCCTGCGGACATTCC
LOC_Os03g14700
OsAffx.9561.1.S1_at--974--8392Chr03:7972591..7972615 (25 bp)
GGCGCGGCAGCCTAGATGTGCGACG
LOC_Os03g14700
Target Sequence 
TCGTCCTCAGCGCTAGTACAGCGGAGGCGGCGGCCATGGGAGTGGACGACGGTGGCGGAGACCTCTCGGATGAGCGGGCG
AGAGCTGGCGGCGAGGGCACAGGCATGAAGGTCACGAACCCTGCGGACATTCCCGGGGGTGGCCTCGATGCGACGGCGGC
GGCGCGGCAGCCTAGATGTGCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis