Browse Element(s) Details


OsAffx.25088.1.S1_at

Description tigr:9631.m01411
TID=OsAffx.25088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CaLB protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1470011/11calcium-dependent lipid-binding protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14650NANA3+7944733..7945173hypothetical protein
LOC_Os03g14669OsAffx.12862.1.S1_x_at11/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14669Os.12037.1.S1_at1/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed
LOC_Os03g14700OsAffx.25088.1.S1_at11/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14700OsAffx.9561.1.S1_at10/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14710OsAffx.12863.1.S1_s_at11/113+7977212..7979387Protein kinase domain containing protein, expressed
LOC_Os03g14720Os.7650.1.S1_at11/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14720OsAffx.8858.1.S1_x_at1/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14730Os.27673.1.S1_at10/113+7990229..7991617esterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25088.1.S1_at--510--2691Chr03:7969483..7969507 (25 bp)
AAGCTGCCCCTGAACGACCTGGAGA
LOC_Os03g14700
OsAffx.25088.1.S1_at--788--8551Chr03:7969458..7969482 (25 bp)
TGGAGTCCGTGCAGGAGATCAACCT
LOC_Os03g14700
OsAffx.25088.1.S1_at--689--7231Chr03:7969421..7969445 (25 bp)
GTCGCTGGACACGACCAAGGTCAAG
LOC_Os03g14700
OsAffx.25088.1.S1_at--891--2891Chr03:7969366..7969390 (25 bp)
AAGGTGAGCTCATGTCCACACGGCG
LOC_Os03g14700
OsAffx.25088.1.S1_at--715--2151Chr03:7969349..7969373 (25 bp)
ACACGGCGGCGCGTCTTGGGTTCTT
LOC_Os03g14700
OsAffx.25088.1.S1_at--187--5811Chr03:7969300..7969324 (25 bp)
GACGCTGACCGTCGTGATAATACGC
LOC_Os03g14700
OsAffx.25088.1.S1_at--18--7411Chr03:7969287..7969311 (25 bp)
GTGATAATACGCAGGTGCTGTACCA
LOC_Os03g14700
OsAffx.25088.1.S1_at--837--8731Chr03:7969269..7969293 (25 bp)
TGTACCACCCGTTCACCAAGGCGGA
LOC_Os03g14700
OsAffx.25088.1.S1_at--297--3391Chr03:7969016..7969040 (25 bp)
CAGCGGCATCGGAGCGTTCGGCACC
LOC_Os03g14700
OsAffx.25088.1.S1_at--579--1771Chr03:7968994..7969018 (25 bp)
ACCGGCCTCAGCAAGGCTGGCAAGT
LOC_Os03g14700
OsAffx.25088.1.S1_at--1155--3791Chr03:7968978..7969002 (25 bp)
CTGGCAAGTTCGTCGGCCGGACCGT
LOC_Os03g14700
Target Sequence 
AAGCTGCCCCTGAACGACCTGGAGATGGAGTCCGTGCAGGAGATCAACCTGCAGCTGCTGTCGTCGCTGGACACGACCAA
GGTCAAGGACAAGAAGGACAGGGGCGTGCTCACCATCAAGGTGAGCTCATGTCCACACGGCGGCGCGTCTTGGGTTCTTG
GGACAAGAGACGCGAAGGTGTTCGACGCTGACCGTCGTGATAATACGCAGGTGCTGTACCACCCGTTCACCAAGGCGGAG
GCGCTCGAGGCGCTGGAGCTGGAGAAGAAGACGGTGGAGGAGCGGCGGAAGACCAAGGAGGAGACGGCGGCCGTCAGCGG
CGCCGCGGACGCGGCGAGCGGCGTGACGTCCACGGTGACCCCCGCGGCTGGGGCGGGCGTCGCTGCGGGAGCCGCCGCGC
CCGGAGCGGGCGCCACCGCCGCCGGCTCCGGCGTGGGGCTGGTCGGCACGGGCATCGGCGCCGTGGGCAGCGGCATCGGA
GCGTTCGGCACCGGCCTCAGCAAGGCTGGCAAGTTCGTCGGCCGGACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis