Browse Element(s) Details


Os.27673.1.S1_at

Description gb:CB682829
DB_XREF= gi:29686554
DB_XREF=OSJNEf10I14.r
CLONE=OSJNEf10I14
TID=Os.27673.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27673 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566047.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1473010/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed
LOC_Os03g14700OsAffx.25088.1.S1_at11/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14700OsAffx.9561.1.S1_at10/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14710OsAffx.12863.1.S1_s_at11/113+7977212..7979387Protein kinase domain containing protein, expressed
LOC_Os03g14720Os.7650.1.S1_at11/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14720OsAffx.8858.1.S1_x_at1/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14730Os.27673.1.S1_at10/113+7990229..7991617esterase, putative, expressed
LOC_Os03g14750NANA3+7999917..8002929retrotransposon protein, putative, unclassified
LOC_Os03g14760NANA3+8003540..8006473transposon protein, putative, unclassified
LOC_Os03g14770NANA3+8006726..8009734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g14780NANA3+8012598..8012983hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27673.1.S1_at--990--8531Chr03:7990724..7990748 (25 bp)
TGGAGGCACTCCAGAAAGCCGGTGT
LOC_Os03g14730
Os.27673.1.S1_at--704--4251Chr03:7990706..7990730 (25 bp)
CCGGTGTCACCGTGGAAGCAAAGCT
LOC_Os03g14730
Os.27673.1.S1_at--1047--7831Chr03:7990670..7990694 (25 bp)
GGTACCACGCGATGGAGCTGTTCAA
LOC_Os03g14730
Os.27673.1.S1_at--336--1611Chr03:7990655..7990679 (25 bp)
AGCTGTTCAAGGAGGACCGCGCCGC
LOC_Os03g14730
Os.27673.1.S1_at--332--3851Chr03:7990515..7990539 (25 bp)
CTGCAACTACCACCACTATGATATT
LOC_Os03g14730
Os.27673.1.S1_at--257--10851Chr03:7990492..7990516 (25 bp)
TTGGTACTACTGTACTGGACTACTG
LOC_Os03g14730
Os.27673.1.S1_at--692--7511Chr03:7990464..7990488 (25 bp)
GTGGTTGGTTGCTGCCATGGCATTA
LOC_Os03g14730
Os.27673.1.S1_at--209--4431Chr03:7990451..7990475 (25 bp)
GCCATGGCATTATCTACCGAGAGTA
LOC_Os03g14730
Os.27673.1.S1_at--532--6011Chr03:7990433..7990457 (25 bp)
GAGAGTATCGACAATTCTCGAAGTA
LOC_Os03g14730
Os.27673.1.S1_at--1024--9332Chr04:34791218..34791242 (23 bp)
TCGAAGTATACATACTCTCTCCGTT
NONE
Os.27673.1.S1_at--209--6191NONE
GAGGAAGTACCACATTGGCAATCAT
NONE
Target Sequence 
TGGAGGCACTCCAGAAAGCCGGTGTCACCGTGGAAGCAAAGCTCGACGGCGCCGGGTACCACGCGATGGAGCTGTTCAAG
GAGGACCGCGCCGCGGAGTTCATCGCGCAGGTCACCGACTTNGTCCGCCGCCACACCGGCGCCGGCAGCGACGTACACGC
CGGAAGGAGCAGGCTGTGATCGATCGAGAGGAGGAGACCATGNTATTGACTGCAACTACCACCACTATGATATTGGTACT
ACTGTACTGGACTACTGGTGGTGGTTGGTTGCTGCCATGGCATTATCTACCGAGAGTATCGACAATTCTCGAAGTATACA
TACTCTCTCCGTTTCACGATATAAGACTTTTTAGTATTGTCCATATACATATATATGTGTTAGATTTATTAGCATATAAA
TANATATTANCAATNCTATAAAATTTTATACTGTAAAATGGAGGAAGTACCACATTGGCAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis