Browse Element(s) Details


Os.51262.1.S1_at

Description gb:AK062366.1
DB_XREF= gi:32972384
TID=Os.51262.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H10, full insert sequence.
FL= gb:AK062366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4576011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific
LOC_Os03g45740OsAffx.13369.1.S1_at11/113+25786179..25787958Transferase family protein, expressed
LOC_Os03g45744OsAffx.5489.1.S1_at2/113+25791902..25792497hypothetical protein
LOC_Os03g45750Os.53245.1.S1_at11/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_x_at6/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_at5/113+25797585..25800118expressed protein
LOC_Os03g45760Os.51262.1.S1_at11/113+25800320..25803231expressed protein
LOC_Os03g45770Os.50221.1.S1_at11/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45770OsAffx.31448.1.S1_at1/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45779Os.38196.1.A1_at11/113+25813713..25815145expressed protein
LOC_Os03g45790NANA3+25816601..25816906expressed protein
LOC_Os03g45800NANA3+25820346..25820702Auxin responsive protein
LOC_Os03g45810OsAffx.23366.2.S1_s_at1/113+25821990..25825596transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.7362.1.S1_x_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820Os.46314.3.S1_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.265.1.S1_at1/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51262.1.S1_at--731--7791Chr03:25801107..25801131 (25 bp)
GGTCGCACTCCTCGTATTGATGGAA
LOC_Os03g45760
Os.51262.1.S1_at--1117--1351Chr03:25801084..25801105 (22 bp)
AGAATTTTTCCGTCAGGCCAGGAGC
LOC_Os03g45760
Os.51262.1.S1_at--564--5871Chr03:25800976..25801000 (25 bp)
GAGCCGCCTATCATACGAACAATTT
LOC_Os03g45760
Os.51262.1.S1_at--1140--2311Chr03:25800765..25800789 (25 bp)
AAAGATCTTTACCTCTCTTTCCAAG
LOC_Os03g45760
Os.51262.1.S1_at--511--911Chr03:25800742..25800766 (25 bp)
AGGCTTGCTGAACCGAAGCTTACCA
LOC_Os03g45760
Os.51262.1.S1_at--525--5931Chr03:25800715..25800739 (25 bp)
GAGCATATGCTTCACATTGGTCCCG
LOC_Os03g45760
Os.51262.1.S1_at--535--31Chr03:25800599..25800724 (25 bp)
ATTGGTCCCGCTTCTGATAATGTGA
LOC_Os03g45760
Os.51262.1.S1_at--612--51Chr03:25800552..25800576 (25 bp)
ATTGCATCTAAAGGTGTGGCGTCCA
LOC_Os03g45760
Os.51262.1.S1_at--302--7551Chr03:25800537..25800561 (25 bp)
GTGGCGTCCAATATGCAGCTGCAAT
LOC_Os03g45760
Os.51262.1.S1_at--340--6911Chr03:25800399..25800423 (25 bp)
GTATCCATGGGAGCCAGCCTTGTAA
LOC_Os03g45760
Os.51262.1.S1_at--292--9771Chr03:25800347..25800371 (25 bp)
TAAGCCTCATGGCAACCTTAAGTTG
LOC_Os03g45760
Target Sequence 
GGTCGCACTCCTCGTATTGATGGAAAAGAATTTTTCCGTCAGGCCAGGAGCCGCCTATCATACGAACAATTTGGAGCATT
CTTAGCCAACATCAAGGAACTCAATGCTCATAAGCAATCAAGAGAGGATACTCTCAAGAAGGCTGAAGAGATCTTTGNTC
CAGACAACAAAGATCTTTACCTCTCTTTCCAAGGCTTGCTGAACCGAAGCTTACCATAGAGCATATGCTTCACATTGGTC
CCGCTTCTGATAATGTGAAGTTATTCGATTGGATTAACTTATTGCATCTAAAGGTGTGGCGTCCAATATGCAGCTGCAAT
TTTTGGGTCATATGAACCTGCATTAGGTTATGAAGTGATGGGGTCTGTCCGACATCAGGGTGTCTGTTTTATTTATGTAT
TTGTAAAAAATGGGTAGCAATTCATTGCCCATAGTATCCATGGGAGCCAGCCTTGTAAAATTGCAGATACAATCGTGAAA
GTATTTAAGCCTCATGGCAACCTTAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis