Browse Element(s) Details


Os.14665.1.S1_at

Description gb:AK111930.1
DB_XREF= gi:37988593
TID=Os.14665.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A06, full insert sequence.
FL= gb:AK111930.1 gb:AK111718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4573011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45690NANA3+25745066..25745896hypothetical protein
LOC_Os03g45700OsAffx.1197.1.S1_x_at4/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45700OsAffx.9790.1.S1_x_at1/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45710Os.26499.1.S1_at11/113+25754553..25755391ferredoxin family protein, expressed
LOC_Os03g45720OsAffx.25566.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45720Os.17364.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45730Os.14665.1.S1_at11/113+25759470..25764976Zinc knuckle family protein, expressed
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific
LOC_Os03g45740OsAffx.13369.1.S1_at11/113+25786179..25787958Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14665.1.S1_at--842--271Chr03:25760027..25760051 (25 bp)
ATAGGCGCTCCATTGATTACGTCGA
LOC_Os03g45730
Os.14665.1.S1_at--373--131Chr03:25760012..25760036 (25 bp)
ATTACGTCGAGGATCACCGCTCTAG
LOC_Os03g45730
Os.14665.1.S1_at--815--1791Chr03:25759997..25760021 (25 bp)
ACCGCTCTAGTGATTACGCCGAGGA
LOC_Os03g45730
Os.14665.1.S1_at--625--3411Chr03:25759963..25759987 (25 bp)
CAGCAAGAGAATGCGCGCGTCTTCT
LOC_Os03g45730
Os.14665.1.S1_at--638--7251Chr03:25759900..25759924 (25 bp)
GTCCAGGTACAGTTCCAGGAAGCTT
LOC_Os03g45730
Os.14665.1.S1_at--990--5391Chr03:25759882..25759906 (25 bp)
GAAGCTTACTTACGAGGATTCATCT
LOC_Os03g45730
Os.14665.1.S1_at--398--6571Chr03:25759866..25759890 (25 bp)
GATTCATCTCCAACCGGTGGTGACA
LOC_Os03g45730
Os.14665.1.S1_at--759--7091Chr03:25759820..25759844 (25 bp)
GTCACAGTTCCAGGAGCCTTACTTA
LOC_Os03g45730
Os.14665.1.S1_at--475--6491Chr03:25759738..25759762 (25 bp)
GATAGGTCACCGTGGACGCAACACA
LOC_Os03g45730
Os.14665.1.S1_at--1123--451Chr03:25759612..25759636 (25 bp)
ATCTCCGAAAGCGATTTTCCTCTTA
LOC_Os03g45730
Os.14665.1.S1_at--754--3151Chr03:25759540..25759564 (25 bp)
AATTCTCATCCCCTCTATGTAATGA
LOC_Os03g45730
Target Sequence 
ATAGGCGCTCCATTGATTACGTCGAGGATCACCGCTCTAGTGATTACGCCGAGGATCACCGCAGCAGCAAGAGAATGCGC
GCGTCTTCTCCATCTCCAACCGGTGGTGACAGGCACAGCAGAGCGAGGTCCAGGTACAGTTCCAGGAAGCTTACTTACGA
GGATTCATCTCCAACCGGTGGTGACAGGCACAGCAGAGCGAGGTCCAGTCACAGTTCCAGGAGCCTTACTTACGAGGATT
CAAGCGATGATGAGCGCAACTTCAAGAGGAGATGGGGAGNCAAAAGATAGATAGGTCACCGTGGACGCAACACAAGGCCG
TGATACCTGAATGAATGAAGCTGATGAACATCTTGCATCATTCCATATCAAATGCTTGTTGATGGATGTATGTGTTAATT
GTAAGCTGAGGAGAAATCTCCGAAAGCGATTTTCCTCTTAACGGAATTGTAATTATGAGCTACTATTAATGTAAAATGAA
TGAGAGCAATTCTCATCCCCTCTATGTAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis