Browse Element(s) Details


Os.39472.1.A1_at

Description gb:CF309020
DB_XREF= gi:33680781
DB_XREF=ABF--03-A20.b1
CLONE=ABF--03-A20
TID=Os.39472.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39472 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_186787.1 (A.thaliana) putative phosphatidylinositolglycan class N short form (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g370504/11Phosphatidylinositolglycan class N family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein
LOC_Os02g37070Os.11272.1.S1_at2/112+22395614..22395856hypothetical protein
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39472.1.A1_at--609--6691Chr02:22383703..22383727 (25 bp)
GTTCCATTTGTTTGGAGATCGACAT
LOC_Os02g37050
Os.39472.1.A1_at--1011--6031Chr02:22383717..22383741 (25 bp)
GAGATCGACATTATACTTTCAGTTT
LOC_Os02g37050
Os.39472.1.A1_at--79--10631Chr02:22383769..22383793 (25 bp)
TTCGATTTTTCTGCCCAAGTTTTGT
LOC_Os02g37050
Os.39472.1.A1_at--942--8571Chr02:22383828..22383852 (25 bp)
TGGTTCCAGTTATCATCTTCTTTAC
LOC_Os02g37050
Os.39472.1.A1_at--506--10551Chr02:22383882..22383906 (25 bp)
TTCTCGTCGAGAATTTAGTTCAGGT
NONE
Os.39472.1.A1_at--1040--1211Chr02:22383898..22383922 (25 bp)
AGTTCAGGTTTGTCTTCATGGGCTC
NONE
Os.39472.1.A1_at--358--9631Chr02:22383913..22383952 (25 bp)
TCATGGGCTCGTCAACACGCATTTT
NONE
Os.39472.1.A1_at--845--10351NONE
TTTTTCCTCCGATATATCTCACGGC
NONE
Os.39472.1.A1_at--1078--3331Chr02:22383970..22383994 (25 bp)
CACGGCTCGCTCAGTTTGTAAACAT
NONE
Os.39472.1.A1_at--693--6051Chr02:22384024..22384048 (25 bp)
GAGATTGGCCTCCTGCATTGATTCA
NONE
Os.39472.1.A1_at--773--6111NONE
GAGTGATTTCTCAAGCAAGATTAGC
NONE
Target Sequence 
GTTCCATTTGTTTGGAGATCGACATTATACTTTCAGTTTTGTTAGAGTTTAACTTTTGGGCGTGGTTTCGATTTTTCTGC
CCAAGTTTTGTAACTTAGCTAGTAGATGGTGAACTTTGTATTAGATGGTTCCAGTTATCATCTTCTTTACATGTAAGAGC
ATTAGGAGCATAGAAAATTTTCTCGTCGAGAATTTAGTTCAGGTTTGTCTTCATGGGCTCGTCAACACGCATTTTTTTCC
TCCGATATATCTCACGGCTCGCTCAGTTTGTAAACATGCAGTAGTGTAGTGTTGGGGAGGCGAGCAGAGATTGGCCTCCT
GCATTGATTCAAGATTTCCAAATGGTAATTGCTGTAACTTGAGTGATTTCTCAAGCAAGATTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39472.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis