Browse Element(s) Details


Os.22928.2.S1_at

Description gb:AK120486.1
DB_XREF= gi:37990109
TID=Os.22928.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113P19, full insert sequence.
FL= gb:AK120486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3704010/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015112molecular_functionnitrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22928.2.S1_at--940--8731Chr02:22364103..22364127 (25 bp)
TGTAAATTTCCCAGAGCTTTCAATT
LOC_Os02g37040
Os.22928.2.S1_at--39--3132Chr02:4993360..4993389 (24 bp)
AATTTCCCAGAGCTTTCAATTTTGC
NONE
Os.22928.2.S1_at--468--10651Chr02:22364096..22364120 (25 bp)
TTCCCAGAGCTTTCAATTTTGCTTT
LOC_Os02g37040
Os.22928.2.S1_at--28--4191Chr02:22364094..22364118 (25 bp)
CCCAGAGCTTTCAATTTTGCTTTCA
LOC_Os02g37040
Os.22928.2.S1_at--39--1371Chr02:22364091..22364115 (25 bp)
AGAGCTTTCAATTTTGCTTTCAGAA
LOC_Os02g37040
Os.22928.2.S1_at--859--10391Chr02:22364080..22364104 (25 bp)
TTTTGCTTTCAGAACTACTTCTATG
LOC_Os02g37040
Os.22928.2.S1_at--1109--10711Chr02:22364078..22364102 (25 bp)
TTGCTTTCAGAACTACTTCTATGAA
LOC_Os02g37040
Os.22928.2.S1_at--1041--5451Chr02:22364069..22364093 (25 bp)
GAACTACTTCTATGAAAACACATTG
LOC_Os02g37040
Os.22928.2.S1_at--740--10571Chr02:22364062..22364086 (25 bp)
TTCTATGAAAACACATTGTCAATGT
LOC_Os02g37040
Os.22928.2.S1_at--943--7071Chr02:22364045..22364069 (25 bp)
GTCAATGTTAATAAAACTGATCGGT
LOC_Os02g37040
Os.22928.2.S1_at--514--7011Chr02:22364038..22364062 (25 bp)
TTAATAAAACTGATCGGTTTTCACT
NONE
Target Sequence 
TGTAAATTTCCCAGAGCTTTCAATTTTGCTTTCAGAACTACTTCTATGAAAACACATTGTCAATGTTAATAAAACTGATC
GGTTTTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22928.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis