Browse Element(s) Details


Os.55640.1.S1_at

Description gb:AK108467.1
DB_XREF= gi:32993676
TID=Os.55640.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E02, full insert sequence.
FL= gb:AK108467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3700011/11Mitochondrial prohibitin complex protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36960Os.53399.1.S1_at10/112+22321453..22325936choline transporter, putative, expressed
LOC_Os02g36974Os.3440.1.S2_at11/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_x_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55640.1.S1_at--871--2971Chr02:22341447..22341471 (25 bp)
AATGTCTCGTACATCCCGGCCGGCG
LOC_Os02g37000
Os.55640.1.S1_at--756--1691Chr02:22341417..22341441 (25 bp)
AGCCAGATGCTGCTTGGTCTCAGCG
LOC_Os02g37000
Os.55640.1.S1_at--1053--1611Chr02:22341396..22341420 (25 bp)
AGCGGCGCTCGGTGAATGAATCATC
LOC_Os02g37000
Os.55640.1.S1_at--1122--8991Chr02:22341380..22341404 (25 bp)
TGAATCATCATCTTTCCCTTTAGTC
LOC_Os02g37000
Os.55640.1.S1_at--847--3551Chr02:22341372..22341396 (25 bp)
CATCTTTCCCTTTAGTCAGTTGCAT
LOC_Os02g37000
Os.55640.1.S1_at--372--7111Chr02:22341358..22341382 (25 bp)
GTCAGTTGCATTACCTTTTAGATCT
LOC_Os02g37000
Os.55640.1.S1_at--764--6411Chr02:22341338..22341362 (25 bp)
GATCTTATTATCACTTCATGGTATT
LOC_Os02g37000
Os.55640.1.S1_at--955--3311Chr02:22341327..22341351 (25 bp)
CACTTCATGGTATTATTGGATCCCA
LOC_Os02g37000
Os.55640.1.S1_at--884--7971Chr02:22341310..22341334 (25 bp)
GGATCCCATAAATTTTCCACTGATG
LOC_Os02g37000
Os.55640.1.S1_at--269--3171Chr02:22341268..22341292 (25 bp)
AATTGCTGCATTTGTCTTGCCCAAA
LOC_Os02g37000
Os.55640.1.S1_at--587--1971Chr02:22341205..22341229 (25 bp)
ACTGCAATGCAGGAATCTTATATTT
LOC_Os02g37000
Target Sequence 
AATGTCTCGTACATCCCGGCCGGCGACAGCAGCCAGATGCTGCTTGGTCTCAGCGGCGCTCGGTGAATGAATCATCATCT
TTCCCTTTAGTCAGTTGCATTACCTTTTAGATCTTATTATCACTTCATGGTATTATTGGATCCCATAAATTTTCCACTGA
TGGAGATGAATTGTCGAACAATTGCTGCATTTGTCTTGCCCAAAATATGTGGCAATTTGTTGAATTTTGTGATCCTTCAA
CNACTGCAATGCAGGAATCTTATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis