Browse Element(s) Details


Os.54283.1.S1_at

Description gb:AK103053.1
DB_XREF= gi:32988262
TID=Os.54283.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117I07, full insert sequence.
FL= gb:AK103053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3699011/11Dynein light chain type 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36950Os.8146.1.S1_at11/112+22314003..22315404expressed protein
LOC_Os02g36950OsAffx.22650.1.S1_x_at1/112+22314003..22315404expressed protein
LOC_Os02g36960Os.53399.1.S1_at10/112+22321453..22325936choline transporter, putative, expressed
LOC_Os02g36974Os.3440.1.S2_at11/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_x_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0005875cellular_componentmicrotubule associated complex
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54283.1.S1_at--874--10631Chr02:22334150..22334174 (25 bp)
TTCGACGCAACATATGGTCCTGCTT
LOC_Os02g36990
Os.54283.1.S1_at--1027--7011Chr02:22334110..22334134 (25 bp)
GTACAGGCTTTGGTTCCTATGTCAC
LOC_Os02g36990
Os.54283.1.S1_at--1110--2891Chr02:22334048..22334072 (25 bp)
AAGGTCTACGTTCTTCTCTTCAGAA
LOC_Os02g36990
Os.54283.1.S1_at--558--10531Chr02:22334030..22334054 (25 bp)
TTCAGAACCGCTGTCGAGCCATTAG
LOC_Os02g36990
Os.54283.1.S1_at--218--5871Chr02:22334015..22334039 (25 bp)
GAGCCATTAGGCCATCCACAATGAG
LOC_Os02g36990
Os.54283.1.S1_at--529--3191Chr02:22333900..22333924 (25 bp)
CAATCGTGGCTCTCCATGGAAATTA
LOC_Os02g36990
Os.54283.1.S1_at--174--1251Chr02:22333821..22333845 (25 bp)
AGTTGAGTCACTTCTCCAGCATGAA
LOC_Os02g36990
Os.54283.1.S1_at--406--5531Chr02:22333796..22333820 (25 bp)
GAAAACTAGCTTTTGCTTCCGACCG
LOC_Os02g36990
Os.54283.1.S1_at--1120--10651Chr02:22333780..22333804 (25 bp)
TTCCGACCGTGCCTTGTATGTTGTA
LOC_Os02g36990
Os.54283.1.S1_at--101--3871Chr02:22333725..22333749 (25 bp)
CTGAGCTGCGAGTTGTGGTACCTGA
LOC_Os02g36990
Os.54283.1.S1_at--668--1151Chr02:22333680..22333704 (25 bp)
AGTCTGATGATGCTTCCCATTTGGA
LOC_Os02g36990
Target Sequence 
TTCGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGTCACCCACTCTGTGGGAGG
CTTCTTGTACTTCTCCGTCGNCAAGGTCTACGTTCTTCTCTTCAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAG
ATCAAAAATCGATTCATTACAAGGTAAAAAATTGCTGTGTATTATATGTATCTNACGTCCAANGAGCCGTAGNAATGTTA
AGGNTGNGTAGANCAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACT
CTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTAGCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATC
TGGTTCTTATTGATCAGAGCTAGAAAACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGA
TGATGCTTCCCATTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis