Browse Element(s) Details


Os.17647.1.S1_at

Description gb:AK073664.1
DB_XREF= gi:32983687
TID=Os.17647.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047H18, full insert sequence.
FL= gb:AK073664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3702011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36960Os.53399.1.S1_at10/112+22321453..22325936choline transporter, putative, expressed
LOC_Os02g36974Os.3440.1.S2_at11/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_x_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17647.1.S1_at--655--4431Chr02:22355483..22355507 (25 bp)
GCCTTTAGACAGCACTCCTCAAGGG
LOC_Os02g37020
Os.17647.1.S1_at--1045--2711Chr02:22355522..22355546 (25 bp)
AAGCAGTAGTGTGGTTTGCCCATCT
LOC_Os02g37020
Os.17647.1.S1_at--366--10711Chr02:22355537..22355561 (25 bp)
TTGCCCATCTGAGAATCATGAGCCT
LOC_Os02g37020
Os.17647.1.S1_at--665--691Chr02:22355554..22355578 (25 bp)
ATGAGCCTCATGCAAAGCCTGAGAC
LOC_Os02g37020
Os.17647.1.S1_at--450--2811Chr02:22355581..22355605 (25 bp)
AAGATCTCGTCATAGAGTCACCTCC
LOC_Os02g37020
Os.17647.1.S1_at--268--1051Chr02:22355606..22355630 (25 bp)
AGGTGACAATCAACTAATCCATGTT
LOC_Os02g37020
Os.17647.1.S1_at--873--9231Chr02:22355623..22355752 (25 bp)
TCCATGTTGCCCAGCAGCTCATATT
LOC_Os02g37020
Os.17647.1.S1_at--304--5071Chr02:22355742..22355765 (24 bp)
GCAGCTCATATTGCTGTCAGCGCAA
LOC_Os02g37020
Os.17647.1.S1_at--861--7451Chr02:22356079..22356103 (25 bp)
GTGGTACTCAGTTATTAAGTCGGTT
LOC_Os02g37020
Os.17647.1.S1_at--296--6151Chr02:22356112..22356136 (25 bp)
GAGGTGAAACATCTGCTCATGTAAA
LOC_Os02g37020
Os.17647.1.S1_at--107--5151Chr02:22356137..22356161 (25 bp)
GCAACTTACTTTTCTCTAGTTTTGG
LOC_Os02g37020
Target Sequence 
GCCTTTAGACAGCACTCCTCAAGGGGCTGTCCCTGAGAAAAGCAGTAGTGTGGTTTGCCCATCTGAGAATCATGAGCCTC
ATGCAAAGCCTGAGACGCAAGATCTCGTCATAGAGTCACCTCCAGGTGACAATCAACTAATCCATGTTGCCCAGCAGCTC
ATATTGCTGTCAGCGCAAAAATGATGAAAATTTTGTGATACATCAAAGCGGAAAGAGGGATTGGTTCGAAAGAATAATGC
TTAAGGGACGGCTCCNATAAGTGGATCATGGATCGTNTGATAATATGCTAAATGCANNTGAGTTCTTCAACGGAGGGGGA
GAGACTTGTGGTGGTAGCGGCAGAGAAATCAAGAAAGCTAGCTTCATAGTGTAGTTATACCTCTACCTAAGAGGTGTTAT
TATAGTAGTGTATAAATTAGGCNGGAGTTACTATTTATTTTGTAGATGATAAATTTTGAACTATTGGTTTAAGAAGGTTA
TAAATTTTGAAGTGGTACTCAGTTATTAAGTCGGTTCNAATTCNGAGGTGAAACATCTGCTCATGTAAAGCAACTTACTT
TTCTCTAGTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis