Browse Element(s) Details


Os.18322.1.S1_at

Description gb:AK109647.1
DB_XREF= gi:32994856
TID=Os.18322.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-H11, full insert sequence.
FL= gb:AK109647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3701011/11flavin-containing monooxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36960Os.53399.1.S1_at10/112+22321453..22325936choline transporter, putative, expressed
LOC_Os02g36974Os.3440.1.S2_at11/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_x_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18322.1.S1_at--203--511Chr02:22345471..22345495 (25 bp)
ATCGGGCCTCTGTTCGAGCACACGT
LOC_Os02g37010
Os.18322.1.S1_at--990--4071Chr02:22345701..22345802 (25 bp)
CGACGTCGAGCCTCACAAAATGTAT
LOC_Os02g37010
Os.18322.1.S1_at--208--5971Chr02:22345812..22345836 (25 bp)
GAGAAGTACTGCGATTTCCCGCGCA
LOC_Os02g37010
Os.18322.1.S1_at--431--4611Chr02:22345885..22345909 (25 bp)
GCGACGACATGGAGACGTTCCGCGA
LOC_Os02g37010
Os.18322.1.S1_at--1017--2111Chr02:22345891..22345915 (25 bp)
ACATGGAGACGTTCCGCGACCGCGA
LOC_Os02g37010
Os.18322.1.S1_at--350--1851Chr02:22345918..22345942 (25 bp)
ACGACAGCGACAACGTCCGCAGGTG
LOC_Os02g37010
Os.18322.1.S1_at--258--1651Chr02:22345972..22345996 (25 bp)
ACCAGGCTCAAGACGAAGAAGACCC
LOC_Os02g37010
Os.18322.1.S1_at--270--9031Chr02:22346023..22346047 (25 bp)
TGCACAGCTCGCTCTGAAGCCTGTA
LOC_Os02g37010
Os.18322.1.S1_at--36--5431Chr02:22346038..22346062 (25 bp)
GAAGCCTGTACAGCTGTGTGTTCTG
LOC_Os02g37010
Os.18322.1.S1_at--775--7471Chr02:22346053..22346077 (25 bp)
GTGTGTTCTGTGCTCTGCACAATCA
LOC_Os02g37010
Os.18322.1.S1_at--600--5131Chr02:22346069..22346093 (25 bp)
GCACAATCATAATTTTCTTCTACAG
LOC_Os02g37010
Target Sequence 
ATCGGGCCTCTGTTCGAGCACACGTTCCCGCCGTCGCTCGCGCCGTCGCTGTCGTTCGTCGGCATCCCGAGGAAGGTGAT
GGTGCCGTGGTTCTTCGAGGCGCAGGGGAGGTGGATCGCCGGCGTGCTGTNCCGNCCGGCGGNCGCTGCCGTCCGAGGAG
GAGATGACNCGGTCCNGTGGAGGAGTTCTACCGCGCCAGGGAGCTCGCCGGCNTGCCNAAGGCGCACACCCACGACGTCG
AGCCTCACAAAATGTATGAGCTTGGGGAGAAGTACTGCGATTTCCCGCGCACGGAGGAGTGGAAGAGGGAGCTGATGGCG
ATCATCAGCCGGAACACGAGCGACGACATGGAGACGTTCCGCGACCGCGACGACGACAGCGACAACGTCCGCAGGTGCCT
GCAGGAGTGGTACGCCCTGGCTGAGCACCAGGCTCAAGACGAAGAAGACCCNAGCTGCCGCTGCTGCACAAGCACCCGTG
CACAGCTCGCTCTGAAGCCTGTACAGCTGTGTGTTCTGTGCTCTGCACAATCATAATTTTCTTCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis