Browse Element(s) Details


Os.35219.1.S1_a_at

Description gb:AK060636.1
DB_XREF= gi:32970654
TID=Os.35219.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C01, full insert sequence.
FL= gb:AK060636.1 gb:AK119275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3703011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein
LOC_Os02g37030Os.35219.1.S1_a_at11/112+22359396..22361451expressed protein
LOC_Os02g37040Os.22928.1.S1_x_at11/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040Os.22928.2.S1_at10/112+22364038..22368547POT family protein, expressed
LOC_Os02g37040OsAffx.4023.1.S1_x_at2/112+22364038..22368547POT family protein, expressed
LOC_Os02g37050OsAffx.12381.1.S1_at11/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.39472.1.A1_at4/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37050Os.50221.1.S1_at1/112+22375330..22383902Phosphatidylinositolglycan class N family protein, expressed
LOC_Os02g37060OsAffx.12382.1.S1_at11/112+22384580..22386485expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35219.1.S1_a_at--695--6411Chr02:22359966..22359990 (25 bp)
GATCTGCACAAAAGGGAGTCCCCTC
LOC_Os02g37030
Os.35219.1.S1_a_at--285--9171Chr02:22359928..22359952 (25 bp)
TGCCCTATATGCTACGAGGACCTTG
LOC_Os02g37030
Os.35219.1.S1_a_at--217--6191Chr02:22359913..22359937 (25 bp)
GAGGACCTTGATCCAACAGATTCAA
LOC_Os02g37030
Os.35219.1.S1_a_at--164--491Chr02:22359861..22359885 (25 bp)
ATCTGTGTCTGTTCTGCCACAAGAG
LOC_Os02g37030
Os.35219.1.S1_a_at--36--10551Chr02:22359834..22359858 (25 bp)
TTCTTGAGGCAGATGGGCGCTGTCC
LOC_Os02g37030
Os.35219.1.S1_a_at--1126--4011Chr02:22359733..22359757 (25 bp)
CGTCTGTCCCGTTCTTGTAGTATGG
LOC_Os02g37030
Os.35219.1.S1_a_at--690--3311Chr02:22359665..22359689 (25 bp)
CACAGTTCTTCTCTATGCATGGTAC
LOC_Os02g37030
Os.35219.1.S1_a_at--144--10751Chr02:22359637..22359661 (25 bp)
TTGGTATGTTACCTACGTTTGCCTT
LOC_Os02g37030
Os.35219.1.S1_a_at--550--491Chr02:22359591..22359615 (25 bp)
ATCGGCATAGGCTGTTTAATCGTAA
LOC_Os02g37030
Os.35219.1.S1_a_at--675--9811Chr02:22359566..22359590 (25 bp)
TAGAAAGTTCCCCAGTAATTTGTTG
LOC_Os02g37030
Os.35219.1.S1_a_at--1101--6011Chr02:22359500..22359524 (25 bp)
GAGAGGACCCTTTGTTATTCATGGT
LOC_Os02g37030
Target Sequence 
GATCTGCACAAAAGGGAGTCCCCTCNAAGCCGACATCCTGCCCTATATGCTACGAGGACCTTGATCCAACAGATTCAAGC
TTCCTCCCTTGCCCCTGCGGTTTTCATCTGTGTCTGTTCTGCCACAAGAGAATTCTTGAGGCAGATGGGCGCTGTCCTGC
CTGCAGGAAGCAGTACATCTCAGCTTCTTCAGGTGGAGAAACGGTTGGAAGTGAACGTGAGATGGGGAATTTNCGTCTGT
CCCGTTCTTGTAGTATGGGTCCAAGATACTAAGATGGCAGGGTTATGACCTAGTTAATCATCACAGTTCTTCTCTATGCA
TGGTACTGTTTGGTATGTTACCTACGTTTGCCTTTTNATATAANGAAATGTGAATATCGGCATAGGCTGTTTAATCGTAA
TAGAAAGTTCCCCAGTAATTTGTTGACTTTTGATGAGTTTGCTTTGTGTATGGTGAATATGTTGCTGAGAGGACCCTTTG
TTATTCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35219.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis