Browse Element(s) Details


Os.8246.1.S1_at

Description gb:AK068936.1
DB_XREF= gi:32978960
TID=Os.8246.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003F10, full insert sequence.
FL= gb:AK068936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3713011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8246.1.S1_at--742--1451Chr02:22439601..22439625 (25 bp)
AGAAGGTGGAGCTCTCTTCCAAGAT
LOC_Os02g37130
Os.8246.1.S1_at--1138--5591Chr02:22439561..22439585 (25 bp)
GAAATTCTCAAGTCAAGTGCCCAAC
LOC_Os02g37130
Os.8246.1.S1_at--910--2851Chr02:22439547..22439571 (25 bp)
AAGTGCCCAACATCCTGTAGGATCT
LOC_Os02g37130
Os.8246.1.S1_at--639--3411Chr02:22439487..22439511 (25 bp)
CAGAAGGTGGATCATCTCTGCTCCA
LOC_Os02g37130
Os.8246.1.S1_at--609--2971Chr02:22439394..22439418 (25 bp)
AATGTTAGGTTGATTGCCGTCTTTC
LOC_Os02g37130
Os.8246.1.S1_at--639--4011Chr02:22439377..22439401 (25 bp)
CGTCTTTCTTTTCGGTCATCGTAAT
LOC_Os02g37130
Os.8246.1.S1_at--660--6771Chr02:22439352..22439376 (25 bp)
GTTAGGTTGATTTGCTTCCTTTCCA
LOC_Os02g37130
Os.8246.1.S1_at--834--10671Chr02:22439337..22439361 (25 bp)
TTCCTTTCCAGTTTTTGTCACTTTG
LOC_Os02g37130
Os.8246.1.S1_at--260--7031Chr02:22439231..22439255 (25 bp)
GTACAGGTTTTCGTTCTGCAGACAC
LOC_Os02g37130
Os.8246.1.S1_at--1036--2171Chr02:22439210..22439234 (25 bp)
ACACGGCTGTGTAATGTCATTCTTT
LOC_Os02g37130
Os.8246.1.S1_at--264--7131Chr02:22439195..22439219 (25 bp)
GTCATTCTTTCTCCAAACTACTTAA
LOC_Os02g37130
Target Sequence 
AGAAGGTGGAGCTCTCTTCCAAGATAAGGGAATTGCAGGAGAAATTCTCAAGTCAAGTGCCCAACATCCTGTAGGATCTA
AACATAATNGTCACGTTGCTGCAACGAGCAGAAGCCAGAAGGTGGATCATCTCTGCTCCATTGACCGGGGAGTTTCAGGA
GAAGAACTGTCAGCACAGATGCTGAACATTTTCCTAGGATATTTTCAGAATGTTAGGTTGATTGCCGTCTTTCTTTTCGG
TCATCGTAATGTTAGGTTGATTTGCTTCCTTTCCAGTTTTTGTCACTTTGGTATCAAAAAGGATATCTTTTTTCCCCAGC
TGCTAGTCCTAGGGTAGATGAATTAATGGAGATCTTGATACTCAAGGTGTTGTACAGGTTTTCGTTCTGCAGACACGGCT
GTGTAATGTCATTCTTTCTCCAAACTACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis