Browse Element(s) Details


Os.11315.1.S1_at

Description gb:AU095601
DB_XREF= gi:8858283
DB_XREF=AU095601
CLONE=R10693
TID=Os.11315.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=5
UG=Os.11315 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3725011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37210OsAffx.2889.1.S1_at11/112+22480288..22480518hypothetical protein
LOC_Os02g37220NANA2+22482259..22485830transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g37230OsAffx.15404.1.S1_at11/112+22487942..22489234hypothetical protein
LOC_Os02g37240OsAffx.27607.2.S1_s_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.27607.1.S1_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.24609.1.S1_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37250Os.11315.1.S1_at11/112+22503680..22504738expressed protein
LOC_Os02g37250Os.20238.1.S1_s_at1/112+22503680..22504738expressed protein
LOC_Os02g37260Os.20238.1.S1_s_at11/112+22523205..22525498expressed protein
LOC_Os02g37260OsAffx.12383.1.S1_at10/112+22523205..22525498expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11315.1.S1_at--558--1531Chr02:22504670..22504694 (25 bp)
AGCTTGCACAAATTAATGGCGTCCA
LOC_Os02g37250
Os.11315.1.S1_at--189--2951Chr02:22504105..22504129 (25 bp)
AAGGCTGCTGCGACTATGACGGCAA
LOC_Os02g37250
Os.11315.1.S1_at--157--1131Chr02:22504081..22504105 (25 bp)
AGTGCATGAGCTACTGCAGCGGCCA
LOC_Os02g37250
Os.11315.1.S1_at--963--291Chr02:22504057..22504081 (25 bp)
ATAGCGGCCCATGCTGCAAGTGGAA
LOC_Os02g37250
Os.11315.1.S1_at--301--8511Chr02:22504037..22504061 (25 bp)
TGGAAAGGCAAGTGCCACGGCTGCT
LOC_Os02g37250
Os.11315.1.S1_at--484--4771Chr02:22504015..22504039 (25 bp)
GCTGCTCATGAGCACGACGAGGCAA
LOC_Os02g37250
Os.11315.1.S1_at--294--6911Chr02:22503928..22503952 (25 bp)
GTATCTGCTATACATGCATGATGAT
LOC_Os02g37250
Os.11315.1.S1_at--1065--6291Chr02:22503909..22503933 (25 bp)
GATGATGTGCTTGTATAGCTACTTA
LOC_Os02g37250
Os.11315.1.S1_at--394--9751Chr02:22503886..22503910 (25 bp)
TAATTATCCCTATAGCTGTTTGCTT
LOC_Os02g37250
Os.11315.1.S1_at--777--2311Chr02:22503854..22503878 (25 bp)
AAAGGATTGCATCTGCTGTGTGTAT
LOC_Os02g37250
Os.11315.1.S1_at--938--7031Chr02:22503824..22503848 (25 bp)
GTACACACGGCTAGCTAGTATGTAT
LOC_Os02g37250
Target Sequence 
AGCTTGCACAAATTAATGGCGTCCAACAAGGCTTTCGTTGTGTTCNCTCTCCTGATGCTGGTGGCTGCATCTGCCGTCGT
CGACGTCGCCTCTGCCGACGGCAAGTGCGGGCCTTGCAACTGTAAAGGCTGCTGCGACTATGACGGCAAGTGCATGAGCT
ACTGCAGCGGCCATAGCGGCCCATGCTGCAAGTGGAAAGGCAAGTGCCACGGCTGCTGCTCATGAGCACGACGAGGCAAG
AACCGAACGAATAATGGATTATGACAAATAAAAACGCACACATAAAACCTTACAGATATATGTATCTGCTATACATGCAT
GATGATGTGCTTGTATAGCTACTTAATTATCCCTATAGCTGTTTGCTTGGTCAATAAAGGATTGCATCTGCTGTGTGTAT
ACTGTGTACACACGGCTAGCTAGTATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis