Browse Element(s) Details


OsAffx.12383.1.S1_at

Description tigr:9630.m03566
TID=OsAffx.12383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3726010/11expressed protein
LOC_Os04g448001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37250Os.11315.1.S1_at11/112+22503680..22504738expressed protein
LOC_Os02g37250Os.20238.1.S1_s_at1/112+22503680..22504738expressed protein
LOC_Os02g37260Os.20238.1.S1_s_at11/112+22523205..22525498expressed protein
LOC_Os02g37260OsAffx.12383.1.S1_at10/112+22523205..22525498expressed protein
LOC_Os02g37270OsAffx.29536.3.S1_x_at1/112+22535037..22535930transposon protein, putative, unclassified
LOC_Os02g37280NANA2+22539604..22540183heavy metal-associated domain containing protein
LOC_Os02g37290NANA2+22545112..22545553heavy metal-associated domain containing protein, expressed
LOC_Os02g37300OsAffx.24612.1.S1_at11/112+22547521..22548357heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12383.1.S1_at--286--4471NONE
GCCTCTGCCGATCACGGCGATCATG
NONE
OsAffx.12383.1.S1_at--856--3511Chr02:22523620..22523644 (25 bp)
CATGACGGCAAGAAGTGCGGGCCTT
LOC_Os02g37260
OsAffx.12383.1.S1_at--245--2951Chr02:22523586..22523610 (25 bp)
AAGGCTGCTGCCACTATGACAAGTG
LOC_Os02g37260
OsAffx.12383.1.S1_at--388--4771Chr02:22523583..22523607 (25 bp)
GCTGCTGCCACTATGACAAGTGCTA
LOC_Os02g37260
OsAffx.12383.1.S1_at--52--10131Chr02:22523572..22523596 (25 bp)
TATGACAAGTGCTACGAGTACTGCA
LOC_Os02g37260
OsAffx.12383.1.S1_at--1114--8371Chr02:22523545..22523569 (25 bp)
GGCGACAGCGGTCCATGCTGTAAAT
LOC_Os02g37260
OsAffx.12383.1.S1_at--449--7611Chr02:22523519..22523543 (25 bp)
GGGCAAGTGCCATTCGTGCTGCTCA
LOC_Os02g37260
OsAffx.12383.1.S1_at--860--1131Chr02:22523514..22523538 (25 bp)
AGTGCCATTCGTGCTGCTCATGAAG
LOC_Os02g37260
OsAffx.12383.1.S1_at--939--2751Chr02:22523492..22523516 (25 bp)
AAGACGATGAATGGATCGATGGCAA
LOC_Os02g37260
OsAffx.12383.1.S1_at--40--9331Chr02:22523477..22523501 (25 bp)
TCGATGGCAAATTAAACGCACGTAA
LOC_Os02g37260
OsAffx.12383.1.S1_at--268--1752Chr04:26305636..26305655 (20 bp)
ACGCACGTAAACCTTATACAAATAT
LOC_Os04g44800
Target Sequence 
GCCTCTGCCGATCACGGCGATCATGACGGCAAGAAGTGCGGGCCTTGCAAGTGTAAAGGCTGCTGCCACTATGACAAGTG
CTACGAGTACTGCAGCGGCGACAGCGGTCCATGCTGTAAATGGGGCAAGTGCCATTCGTGCTGCTCATGAAGACGATGAA
TGGATCGATGGCAAATTAAACGCACGTAAACCTTATACAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis