Browse Element(s) Details


Os.20238.1.S1_s_at

Description gb:AU101647
DB_XREF= gi:9865897
DB_XREF=AU101647
CLONE=R1066
TID=Os.20238.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20238 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3726011/11expressed protein
LOC_Os02g372501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37250Os.11315.1.S1_at11/112+22503680..22504738expressed protein
LOC_Os02g37250Os.20238.1.S1_s_at1/112+22503680..22504738expressed protein
LOC_Os02g37260Os.20238.1.S1_s_at11/112+22523205..22525498expressed protein
LOC_Os02g37260OsAffx.12383.1.S1_at10/112+22523205..22525498expressed protein
LOC_Os02g37270OsAffx.29536.3.S1_x_at1/112+22535037..22535930transposon protein, putative, unclassified
LOC_Os02g37280NANA2+22539604..22540183heavy metal-associated domain containing protein
LOC_Os02g37290NANA2+22545112..22545553heavy metal-associated domain containing protein, expressed
LOC_Os02g37300OsAffx.24612.1.S1_at11/112+22547521..22548357heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20238.1.S1_s_at--273--8711Chr02:22523403..22523427 (25 bp)
TGTCCAGCTACTTCTCCCTATAGTT
LOC_Os02g37260
Os.20238.1.S1_s_at--590--4351Chr02:22523400..22523424 (25 bp)
CCAGCTACTTCTCCCTATAGTTGTT
LOC_Os02g37260
Os.20238.1.S1_s_at--1087--8731Chr02:22523328..22523352 (25 bp)
TGTACACACGGCTAGTGCTACTATG
LOC_Os02g37260
Os.20238.1.S1_s_at--937--7031Chr02:22523327..22523351 (25 bp)
GTACACACGGCTAGTGCTACTATGT
LOC_Os02g37260
Os.20238.1.S1_s_at--711--2191Chr02:22523325..22523349 (25 bp)
ACACACGGCTAGTGCTACTATGTAT
LOC_Os02g37260
Os.20238.1.S1_s_at--601--2171Chr02:22523323..22523347 (25 bp)
ACACGGCTAGTGCTACTATGTATAT
LOC_Os02g37260
Os.20238.1.S1_s_at--560--1931Chr02:22523321..22523345 (25 bp)
ACGGCTAGTGCTACTATGTATATGC
LOC_Os02g37260
Os.20238.1.S1_s_at--460--4871Chr02:22523318..22523342 (25 bp)
GCTAGTGCTACTATGTATATGCTCT
LOC_Os02g37260
Os.20238.1.S1_s_at--499--10071Chr02:22523316..22523340 (25 bp)
TAGTGCTACTATGTATATGCTCTTA
LOC_Os02g37260
Os.20238.1.S1_s_at--1027--7311Chr02:22523314..22523338 (25 bp)
GTGCTACTATGTATATGCTCTTATA
LOC_Os02g37260
Os.20238.1.S1_s_at--71--8772Chr02:22523305..22523329 (25 bp)
TGTATATGCTCTTATACAAGGGCTA
LOC_Os02g37260
Target Sequence 
TGTCCAGCTACTTCTCCCTATAGTTGTTTNCTTTGGTCAATAAAGGATTGCATCGATCTNTGCTGTGTGTACATGTGTAC
ACACGGCTAGTGCTACTATGTATATGCTCTTATACAAGGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20238.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis