Browse Element(s) Details


OsAffx.27608.1.S1_at

Description tigr:9634.m01319
TID=OsAffx.27608.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1328011/11O-methyltransferase ZRP4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13240OsAffx.4825.1.S1_at11/116+7277366..7281976BURP domain containing protein
LOC_Os06g13250OsAffx.27607.1.S1_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13250OsAffx.27607.2.S1_s_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13260OsAffx.15404.1.S1_at11/116+7294292..7295555hypothetical protein
LOC_Os06g13270NANA6+7297666..7301171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13280OsAffx.27608.1.S1_at11/116+7305307..7306548O-methyltransferase ZRP4, putative
LOC_Os06g13290NANA6+7310746..7312078retrotransposon protein, putative, unclassified
LOC_Os06g13300OsAffx.4826.1.S1_at11/116+7314027..7316138hypothetical protein
LOC_Os06g13310OsAffx.15405.1.S1_at11/116+7317600..7322202SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13320Os.52735.1.S1_at11/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13320OsAffx.24030.1.S1_x_at4/116+7324615..7326450Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27608.1.S1_at--777--6131Chr06:7306005..7306029 (25 bp)
GAGGGACAACTCGTACAGTCGGGCC
LOC_Os06g13280
OsAffx.27608.1.S1_at--579--1551Chr06:7305953..7305977 (25 bp)
AGCTTCGTCATGGACATCGCGGTGA
LOC_Os06g13280
OsAffx.27608.1.S1_at--347--871Chr06:7305857..7305881 (25 bp)
ATGGCCGTTGCTAGGGCGTTTCCGC
LOC_Os06g13280
OsAffx.27608.1.S1_at--307--8371Chr06:7305843..7305867 (25 bp)
GGCGTTTCCGCACATCAAGTGTAGT
LOC_Os06g13280
OsAffx.27608.1.S1_at--862--2851Chr06:7305827..7305851 (25 bp)
AAGTGTAGTGTGCTTGACCTCCCGC
LOC_Os06g13280
OsAffx.27608.1.S1_at--989--2671Chr06:7305802..7305826 (25 bp)
AAGCGATCAGCGAGGCACCCGCAGA
LOC_Os06g13280
OsAffx.27608.1.S1_at--122--5111Chr06:7305775..7305799 (25 bp)
GCACGGTGAATTTTGTCGCTGGTAA
LOC_Os06g13280
OsAffx.27608.1.S1_at--473--7231Chr06:7305761..7305785 (25 bp)
GTCGCTGGTAACATGTTCGAGTATA
LOC_Os06g13280
OsAffx.27608.1.S1_at--5--6091Chr06:7305743..7305767 (25 bp)
GAGTATATTCCTCCAGCAAATGCCG
LOC_Os06g13280
OsAffx.27608.1.S1_at--1000--1471Chr06:7305526..7305550 (25 bp)
AGCAATTCCTGCCAGAGGTGACGGA
LOC_Os06g13280
OsAffx.27608.1.S1_at--251--3571Chr06:7305487..7305511 (25 bp)
CATAAATACGGTGGTCGGGTCTGGA
LOC_Os06g13280
Target Sequence 
GAGGGACAACTCGTACAGTCGGGCCCTCAACGAGGCCTGCGCCGGTGACACCAGCTTCGTCATGGACATCGCGGTGAGGG
AGGGCGGCGACGTGTTCCGCGGGCTCAGCTCGCTGGTCGACGTCGGCGGCGGGCACGGAGCGGCGGCGATGGCCGTTGCT
AGGGCGTTTCCGCACATCAAGTGTAGTGTGCTTGACCTCCCGCAAGCGATCAGCGAGGCACCCGCAGATGGCACGGTGAA
TTTTGTCGCTGGTAACATGTTCGAGTATATTCCTCCAGCAAATGCCGTCTTCCTCAAGTATGTTCTACATTGTTGGGGAG
AGGAGGATTGCATCAAGATACTTCAACAGTGCAAGAAAGCAATTCCTGCCAGAGGTGACGGAGGAAAAGTGATAATCATA
AATACGGTGGTCGGGTCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis