Browse Element(s) Details


OsAffx.4825.1.S1_at

Description tigr:9634.m01315
TID=OsAffx.4825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistant specific protein-2, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1324011/11BURP domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13220OsAffx.27606.1.S1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13220Os.51377.1.A1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13230OsAffx.4823.1.S1_at11/116+7267095..7267601hypothetical protein
LOC_Os06g13240OsAffx.4825.1.S1_at11/116+7277366..7281976BURP domain containing protein
LOC_Os06g13250OsAffx.27607.1.S1_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13250OsAffx.27607.2.S1_s_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13260OsAffx.15404.1.S1_at11/116+7294292..7295555hypothetical protein
LOC_Os06g13270NANA6+7297666..7301171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13280OsAffx.27608.1.S1_at11/116+7305307..7306548O-methyltransferase ZRP4, putative

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4825.1.S1_at--186--8471Chr06:7281468..7281492 (25 bp)
TGGCCGATGGCATTGCAGCGACATT
LOC_Os06g13240
OsAffx.4825.1.S1_at--213--1651Chr06:7281484..7281508 (25 bp)
AGCGACATTGCAGGCCTGTGAGCAC
LOC_Os06g13240
OsAffx.4825.1.S1_at--78--2291Chr06:7281536..7281560 (25 bp)
AAATGCGCTACGTCGATCGAGTCAT
LOC_Os06g13240
OsAffx.4825.1.S1_at--101--6271Chr06:7281566..7281590 (25 bp)
GATGTCGTTGTGTCCTCGCTAGGCA
LOC_Os06g13240
OsAffx.4825.1.S1_at--586--2871Chr06:7281630..7281654 (25 bp)
AAGGTGTGCCGTCGCTAAGGTACAT
LOC_Os06g13240
OsAffx.4825.1.S1_at--1125--9771Chr06:7281645..7281669 (25 bp)
TAAGGTACATCGTGGCCTCTGCTAC
LOC_Os06g13240
OsAffx.4825.1.S1_at--373--2551Chr06:7281680..7281704 (25 bp)
AACTCCCAGAGTATGCTAGCTTGCC
LOC_Os06g13240
OsAffx.4825.1.S1_at--774--8951Chr06:7281706..7281730 (25 bp)
TGACATGCTATACCCCTACAAGGTG
LOC_Os06g13240
OsAffx.4825.1.S1_at--155--251Chr06:7281763..7281787 (25 bp)
ATATCAGGTGTCACTGGTCAGCGGT
LOC_Os06g13240
OsAffx.4825.1.S1_at--1066--7791Chr06:7281794..7281818 (25 bp)
GGTCGACCGCTCATTGATGGATTAT
LOC_Os06g13240
OsAffx.4825.1.S1_at--1144--2391Chr06:7281835..7281859 (25 bp)
AAACACGTCGGACTGGGACACTGGC
LOC_Os06g13240
Target Sequence 
TGGCCGATGGCATTGCAGCGACATTGCAGGCCTGTGAGCACACAGGAATGGTCCATGGCGAGAAGGCTAAATGCGCTACG
TCGATCGAGTCATTGCTTGATGTCGTTGTGTCCTCGCTAGGCACAAAGCTTGTCCGGGCCTTGACCCCTGGAGCTCCAAT
GGAAGGTGTGCCGTCGCTAAGGTACATCGTGGCCTCTGCTACACCGGTGCCCAACTCCCAGAGTATGCTAGCTTGCCATG
ACATGCTATACCCCTACAAGGTGTTCTTCTGTCACACGCCCAAGCAAACCAGGTTATATCAGGTGTCACTGGTCAGCGGT
GAATCTGGTCGACCGCTCATTGATGGATTATTGGCTGTGTGCCACCAAAACACGTCGGACTGGGACACTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis