Browse Element(s) Details


Os.51377.1.A1_at

Description gb:AK062674.1
DB_XREF= gi:32972692
TID=Os.51377.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G07, full insert sequence.
FL= gb:AK062674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1322011/11axi 1 gene, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein
LOC_Os06g13210Os.52127.1.S1_at11/116+7246885..7250001POT family protein, expressed
LOC_Os06g13220OsAffx.27606.1.S1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13220Os.51377.1.A1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13230OsAffx.4823.1.S1_at11/116+7267095..7267601hypothetical protein
LOC_Os06g13240OsAffx.4825.1.S1_at11/116+7277366..7281976BURP domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51377.1.A1_at--273--6611Chr06:7257662..7257686 (25 bp)
GATTGGCTCTCACTGCTAGCAGAAA
LOC_Os06g13220
Os.51377.1.A1_at--470--6231Chr06:7257704..7257728 (25 bp)
GATGGCTCTAGCACAGTTTAATATG
LOC_Os06g13220
Os.51377.1.A1_at--1092--711Chr06:7257726..7257750 (25 bp)
ATGATCAACTAGCATTTCCTGGCTT
LOC_Os06g13220
Os.51377.1.A1_at--985--10291Chr06:7257740..7257764 (25 bp)
TTTCCTGGCTTCCTGATCAGACAAA
LOC_Os06g13220
Os.51377.1.A1_at--929--7931Chr06:7257773..7257797 (25 bp)
GGATTTCAATACCATGGCACTTTCT
LOC_Os06g13220
Os.51377.1.A1_at--418--8251Chr06:7257788..7257812 (25 bp)
GGCACTTTCTTATCTCCTATGTGAT
LOC_Os06g13220
Os.51377.1.A1_at--630--8111Chr06:7257821..7257845 (25 bp)
GGACTGAAGTGTGCATCCAAGCTGC
LOC_Os06g13220
Os.51377.1.A1_at--183--3851Chr06:7257842..7257866 (25 bp)
CTGCAGTGCTGCCAGATTTTTTGAT
LOC_Os06g13220
Os.51377.1.A1_at--347--5951Chr06:7257944..7257968 (25 bp)
GAGCAACGTTAGCAGCACCATTCTA
LOC_Os06g13220
Os.51377.1.A1_at--1066--5291Chr06:7257974..7257998 (25 bp)
GAAGGCTGTCTTGTTTGTATCATTT
LOC_Os06g13220
Os.51377.1.A1_at--373--6091Chr06:7258071..7258095 (25 bp)
GAGTCAAGTGGCAACTAGTTCTCTT
LOC_Os06g13220
Target Sequence 
GATTGGCTCTCACTGCTAGCAGAAACAATTGCACTNTCTGATGATGGCTCTAGCACAGTTTAATATGATCAACTAGCATT
TCCTGGCTTCCTGATCAGACAAATTTGTTTTGGATTTCAATACCATGGCACTTTCTTATCTCCTATGTGATGGTACCAAG
GACTGAAGTGTGCATCCAAGCTGCAGTGCTGCCAGATTTTTTGATACAGCTAAATTGAACAATGCGGTTACTGGGAGTAC
ATCATCAGCATCTGTCNCAAAAAGAAACAATTTCATTTTNCCGAGCAACGTTAGCAGCACCATTCTAGTTTTGAAGGCTG
TCTTGTTTGTATCATTTGACAATTCAGGATGCAGGTTTTTGGCAAATTGAGTATGTGATCTTCAATATGGTTTCTTTCAG
TCATTTGATGAGTCAAGTGGCAACTAGTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51377.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis