Browse Element(s) Details


Os.52127.1.S1_at

Description gb:AK064959.1
DB_XREF= gi:32974977
TID=Os.52127.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001A13, full insert sequence.
FL= gb:AK064959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1321011/11POT family protein, expressed
LOC_Os06g132007/11Major Facilitator Superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13170Os.53308.1.A1_at7/116+7220866..7223018methyltransferase GidB family protein
LOC_Os06g13180OsAffx.27604.1.S1_x_at11/116+7223985..7225100Matrixin family protein, expressed
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein
LOC_Os06g13210Os.52127.1.S1_at11/116+7246885..7250001POT family protein, expressed
LOC_Os06g13220OsAffx.27606.1.S1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13220Os.51377.1.A1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13230OsAffx.4823.1.S1_at11/116+7267095..7267601hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52127.1.S1_at--656--8352Chr06:7249532..7249556 (25 bp)
GGCGGCCGCCTGAGCATATTCTGGC
LOC_Os06g13210
Os.52127.1.S1_at--1141--1652Chr06:7249640..7249664 (25 bp)
AGCGCCATGAGGACCGTCGGCATCG
LOC_Os06g13210
Os.52127.1.S1_at--13--391Chr06:7249715..7249739 (25 bp)
ATCACCGCGCTCGAGATGGTGACGG
LOC_Os06g13210
Os.52127.1.S1_at--804--5092Chr06:7249759..7249783 (25 bp)
GCACGATCACGGGTGGTTCTCCGAT
LOC_Os06g13210
Os.52127.1.S1_at--442--8572Chr06:7249772..7249796 (25 bp)
TGGTTCTCCGATGATCCCCGGGAGG
LOC_Os06g13210
Os.52127.1.S1_at--489--10872Chr06:7249823..7249847 (25 bp)
TTGGCGCTCCTCAGCTGCGTCAGCT
LOC_Os06g13210
Os.52127.1.S1_at--354--7212Chr06:7249850..7249874 (25 bp)
GTCGTCTTCACACACTTGTGCAAGT
LOC_Os06g13210
Os.52127.1.S1_at--614--2172Chr06:7249861..7249885 (25 bp)
ACACTTGTGCAAGTACTACTAGCAT
LOC_Os06g13210
Os.52127.1.S1_at--677--2011Chr06:7249875..7249899 (25 bp)
ACTACTAGCATTCATCTCATCACGT
LOC_Os06g13210
Os.52127.1.S1_at--534--3751Chr06:7249890..7249914 (25 bp)
CTCATCACGTAGAGATCAGATTTTA
LOC_Os06g13210
Os.52127.1.S1_at--1160--131Chr06:7249975..7249999 (25 bp)
ATTACACGCTTTTCATGGTGAGCTT
LOC_Os06g13210
Target Sequence 
GGCGGCCGCCTGAGCATATTCTGGCTCCTCCCGCAGTACGTGCTCCTCGGCGTCTCCGACGTGTTCACGGTGGTGGGCAT
GCAGGAGTTCTTCTACACCCAGGTCCCCAGCGCCATGAGGACCGTCGGCATCGCGCTCTACCTCAGCGTCTTCGGCGTCG
GCAGCTTCGTCGGCGCGTTCCTCATCACCGCGCTCGAGATGGTGACGGCGGGGGGCGGCGGCGGCGGGCACGATCACGGG
TGGTTCTCCGATGATCCCCGGGAGGCGCGGCTGGACAAGTACTACTGGTTCTTGGCGCTCCTCAGCTGCGTCAGCTTCGT
CGTCTTCACACACTTGTGCAAGTACTACTAGCATTCATCTCATCACGTAGAGATCAGATTTTATTTAGCATTTGTTGGAA
CTTGGAAGTTGGGGCCTTTGTTACTGTGTTTGTGTGTGTGTAAATTACACGCTTTTCATGGTGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis