Browse Element(s) Details


Os.53308.1.A1_at

Description gb:AK071932.1
DB_XREF= gi:32981955
TID=Os.53308.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013086D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013086D06, full insert sequence.
FL= gb:AK071932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g131707/11methyltransferase GidB family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed
LOC_Os06g13150OsAffx.27603.1.S1_at11/116+7215474..7216002hypothetical protein
LOC_Os06g13160Os.54594.1.S1_at11/116+7217854..7219284Plant viral-response family protein, expressed
LOC_Os06g13170Os.53308.1.A1_at7/116+7220866..7223018methyltransferase GidB family protein
LOC_Os06g13180OsAffx.27604.1.S1_x_at11/116+7223985..7225100Matrixin family protein, expressed
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein
LOC_Os06g13210Os.52127.1.S1_at11/116+7246885..7250001POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53308.1.A1_at--1116--3671Chr06:7222083..7222174 (25 bp)
CTGAAAGTTTTAGCCGAGTACTGCC
LOC_Os06g13170
Os.53308.1.A1_at--216--9171Chr06:7222171..7222195 (25 bp)
TGCCTCCCGTTAGTCCGAATTGATG
LOC_Os06g13170
Os.53308.1.A1_at--1042--4751Chr06:7222207..7222231 (25 bp)
GCTGCGAAAGGACACAATCCCCATG
LOC_Os06g13170
Os.53308.1.A1_at--834--2811Chr06:7222346..7222370 (25 bp)
AAGTTGGGTGCCTCCATGTTAGAAA
LOC_Os06g13170
Os.53308.1.A1_at--111--6291Chr06:7222887..7222908 (22 bp)
GATGTTGAATCTATGGGACCTCATG
LOC_Os06g13170
Os.53308.1.A1_at--995--7051Chr06:7222909..7222933 (25 bp)
GTCAACGGACGGCTGTTGTGTACAT
LOC_Os06g13170
Os.53308.1.A1_at--589--9911Chr06:7222946..7222970 (25 bp)
TACTCCAAAGAAATACCCGCGGCAT
LOC_Os06g13170
Os.53308.1.A1_at--1055--8271Chr06:7223042..7223063 (22 bp)
GGCATCCAGGTACTCCTTCGAAGAT
NONE
Os.53308.1.A1_at--20--5291Chr06:7223077..7223101 (25 bp)
GAATGTTCACTTTGCTGTAGATTTA
NONE
Os.53308.1.A1_at--1027--2251Chr06:7223126..7223150 (25 bp)
AAATCCGTGGTTAGCCTCACTTGAA
NONE
Os.53308.1.A1_at--648--6971Chr06:7223326..7223350 (25 bp)
GTACCATCCATTTTCCGTTGACTAT
NONE
Target Sequence 
CTGAAAGTTTTAGCCGAGTACTGCCTCCCGTTAGTCCGAATTGATGGTTTATTTATAGCTGCGAAAGGACACAATCCCCA
TGAAGAAATAAAAAATGCTAAAAGTGCAGTACATAAGTTGGGTGCCTCCATGTTAGAAATATGTGATGTTGAATCTATGG
GACCTCATGGTCAACGGACGGCTGTTGTGTACATAAAGGAGTGCATTACTCCAAAGAAATACCCGCGGCATCCAGGTACT
CCTTCGAAGATGCCCTTATGAGAAGAATGTTCACTTTGCTGTAGATTTACAAATTTACAATAGCCAAAAGCTGAAATCCG
TGGTTAGCCTCACTTGAATGATATTGGCTGGAAGGATTATTCATAAATCATGGAAGGATTGTTACACCNTCCTGATATCA
GTTATTTGATGAATCAGACTAACAAATCGTTAAGCATTTTTTAAAGTGTAATAATTTCTAGGATTGTCACTGTAACAATG
TTGCAGTAGAAAAAATAGCATGAATTGCTTGTTGTACCATCCATTTTCCGTTGACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53308.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis