Browse Element(s) Details


Os.54594.1.S1_at

Description gb:AK106064.1
DB_XREF= gi:32991273
TID=Os.54594.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G08, full insert sequence.
FL= gb:AK106064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1316011/11Plant viral-response family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed
LOC_Os06g13150OsAffx.27603.1.S1_at11/116+7215474..7216002hypothetical protein
LOC_Os06g13160Os.54594.1.S1_at11/116+7217854..7219284Plant viral-response family protein, expressed
LOC_Os06g13170Os.53308.1.A1_at7/116+7220866..7223018methyltransferase GidB family protein
LOC_Os06g13180OsAffx.27604.1.S1_x_at11/116+7223985..7225100Matrixin family protein, expressed
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54594.1.S1_at--809--3431Chr06:7218262..7218286 (25 bp)
CAGATGGAAGGGATGCCGCTGCATT
LOC_Os06g13160
Os.54594.1.S1_at--180--3851Chr06:7218244..7218268 (25 bp)
CTGCATTCGCAGTTCACATTGGATT
LOC_Os06g13160
Os.54594.1.S1_at--361--7231Chr06:7218155..7218179 (25 bp)
GTCGCATCACGAGATCACGGTGCAA
LOC_Os06g13160
Os.54594.1.S1_at--431--7771Chr06:7218137..7218161 (25 bp)
GGTGCAAACCTCTGATTCCAAGTGA
LOC_Os06g13160
Os.54594.1.S1_at--986--691Chr06:7218113..7218137 (25 bp)
ATGAGACTGTGAATTATGCGGCGAT
LOC_Os06g13160
Os.54594.1.S1_at--815--10131Chr06:7218099..7218123 (25 bp)
TATGCGGCGATTTTTCGGTGTACAA
LOC_Os06g13160
Os.54594.1.S1_at--883--10611Chr06:7218086..7218110 (25 bp)
TTCGGTGTACAATAGCTCAGCCAAG
LOC_Os06g13160
Os.54594.1.S1_at--373--991Chr06:7218063..7218087 (25 bp)
AGGAGGATATCTGCCAAGCTAGCTG
LOC_Os06g13160
Os.54594.1.S1_at--778--2691Chr06:7218048..7218072 (25 bp)
AAGCTAGCTGCAGGGTGTGTTTTCA
LOC_Os06g13160
Os.54594.1.S1_at--1151--5951Chr06:7217969..7217993 (25 bp)
GAGAATCAGATCTTGCTCAGTTTGA
LOC_Os06g13160
Os.54594.1.S1_at--472--7411Chr06:7217883..7217907 (25 bp)
GTGATTTCAGATAGCACTTTCGGAA
LOC_Os06g13160
Target Sequence 
CAGATGGAAGGGATGCCGCTGCATTCGCAGTTCACATTGGATTCAGACGAAGAGAAGGAAGATGAAAGGATCACCAATTC
GGNAATGCCGGTGGCGAATGGATCGGGGTCGCATCACGAGATCACGGTGCAAACCTCTGATTCCAAGTGATGAGACTGTG
AATTATGCGGCGATTTTTCGGTGTACAATAGCTCAGCCAAGGAGGATATCTGCCAAGCTAGCTGCAGGGTGTGTTTTCAG
TATGATGTTCAGTTTTGATGCTTTATTACTTCAGAATTCACCATATATGTGCAGAGAATCAGATCTTGCTCAGTTTGATC
TGCATACATCAAATTTAACTTGTGCATTAGATTTAGCTACTGTACAATATTGTAATGTTGTGATTTCAGATAGCACTTTC
GGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis