Browse Element(s) Details


OsAffx.27605.1.S1_s_at

Description tigr:9634.m01308
TID=OsAffx.27605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1319011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed
LOC_Os06g13150OsAffx.27603.1.S1_at11/116+7215474..7216002hypothetical protein
LOC_Os06g13160Os.54594.1.S1_at11/116+7217854..7219284Plant viral-response family protein, expressed
LOC_Os06g13170Os.53308.1.A1_at7/116+7220866..7223018methyltransferase GidB family protein
LOC_Os06g13180OsAffx.27604.1.S1_x_at11/116+7223985..7225100Matrixin family protein, expressed
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein
LOC_Os06g13210Os.52127.1.S1_at11/116+7246885..7250001POT family protein, expressed
LOC_Os06g13220OsAffx.27606.1.S1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13220Os.51377.1.A1_at11/116+7253017..7262715axi 1 gene, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27605.1.S1_s_at--114--9991Chr06:7229447..7229471 (25 bp)
TACCAGCAGAAGAAGTCCGGTGGCA
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--54--1531Chr06:7229487..7229511 (25 bp)
AGCAGAGCTCGGAGATCGCCGGCTA
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--1130--531Chr06:7229501..7229525 (25 bp)
ATCGCCGGCTACTGATCGTTGATAC
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--593--6651Chr06:7229518..7229542 (25 bp)
GTTGATACCACATCATATCGTTGAT
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--93--731Chr06:7229544..7229568 (25 bp)
ATGATTTGAGGTGTTCTTGCGTGTA
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--1090--6731Chr06:7229556..7229580 (25 bp)
GTTCTTGCGTGTAGATAGGTCGATC
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--690--7691Chr06:7229583..7229607 (25 bp)
GGGTCATTCTTTGGACCGATCGATA
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--80--8111Chr06:7229595..7229619 (25 bp)
GGACCGATCGATATATGGACGTTAA
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--114--7851Chr06:7229611..7229635 (25 bp)
GGACGTTAATTTGTTCGTCTTTGTG
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--506--7471Chr06:7229743..7229767 (25 bp)
GTGGGTTGGGCATCGTTAGATCCAA
LOC_Os06g13190
OsAffx.27605.1.S1_s_at--694--2011Chr06:7229836..7229860 (25 bp)
ACTCATATAGGAGATGGGTGCTCTT
LOC_Os06g13190
Target Sequence 
TACCAGCAGAAGAAGTCCGGTGGCAAGAAGCACGGCGACCAGCAGAGCTCGGAGATCGCCGGCTACTGATCGTTGATACC
ACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGAT
ATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAAC
TCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCA
ACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGG
AGATGGGTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27605.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis