Browse Element(s) Details


OsAffx.27606.1.S1_at

Description tigr:9634.m01312
TID=OsAffx.27606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to X80301 from Nicotiana tabacum.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1322011/11axi 1 gene, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein
LOC_Os06g13210Os.52127.1.S1_at11/116+7246885..7250001POT family protein, expressed
LOC_Os06g13220OsAffx.27606.1.S1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13220Os.51377.1.A1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13230OsAffx.4823.1.S1_at11/116+7267095..7267601hypothetical protein
LOC_Os06g13240OsAffx.4825.1.S1_at11/116+7277366..7281976BURP domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27606.1.S1_at--856--2411Chr06:7260907..7260930 (24 bp)
AAAAAGGCAGACATGATCCCAGAAT
LOC_Os06g13220
OsAffx.27606.1.S1_at--179--6391Chr06:7260921..7261319 (25 bp)
GATCCCAGAATCCTCATGTTTTTTG
LOC_Os06g13220
OsAffx.27606.1.S1_at--875--6811Chr06:7261312..7261336 (25 bp)
GTTTTTTGCTCTGCATATGTGGAGA
LOC_Os06g13220
OsAffx.27606.1.S1_at--59--8271Chr06:7261680..7261704 (25 bp)
GGCAGCTTCCAAATGAGCAGCCAAA
LOC_Os06g13220
OsAffx.27606.1.S1_at--526--2311Chr06:7261702..7261726 (25 bp)
AAACTACTCTTCCTCAACGGCCAAT
LOC_Os06g13220
OsAffx.27606.1.S1_at--1066--5851Chr06:7261727..7261751 (25 bp)
GAGCGACGGCGTGATAGGCACCCAC
LOC_Os06g13220
OsAffx.27606.1.S1_at--776--6451Chr06:7261918..7261942 (25 bp)
GATCAACGGCTGTCCTATTATACAC
LOC_Os06g13220
OsAffx.27606.1.S1_at--682--1351Chr06:7262422..7262446 (25 bp)
AGAGATGCTGTGCAACCACGAGCCG
LOC_Os06g13220
OsAffx.27606.1.S1_at--147--3251Chr06:7262434..7262458 (25 bp)
CAACCACGAGCCGACATGATCAAAG
LOC_Os06g13220
OsAffx.27606.1.S1_at--342--1611Chr06:7262604..7262623 (20 bp)
AGCTGGGCTGAAGAGATGTCCCGAA
LOC_Os06g13220
OsAffx.27606.1.S1_at--529--5331Chr06:7262658..7262682 (25 bp)
GAAGTCCATTATCAGAGAGCTTTCA
LOC_Os06g13220
Target Sequence 
AAAAAGGCAGACATGATCCCAGAATCCTCATGTTTTTTGCTCTGCATATGTGGAGAAGCATTCATTTAAGTTCAGTTAAG
GATGATATTGATTACATGGACATAATGTACTACATATGGCAGCTTCCAAATGAGCAGCCAAACTACTCTTCCTCAACGGC
CAATGAGCGACGGCGTGATAGGCACCCACCTCCCATGGACCCTGAAAAGTTGAAGGCTATTTTTACAGTTGGAAAGGCAT
TTATTGCTGCAACTATATTGGTGTTTGGAGGATCAACGGCTGTCCTATTATACACAGCAGATAAGCTGCAGTTGCATTCA
GTAGATGATGTCAGAACTAAAGGAAGAGATGCTGTGCAACCACGAGCCGACATGATCAAAGAACAAATAGCTCCATTGAG
AAGCTGGGCTGAAGAGATGTCCCGAAAATGGCATTTCGAAGGAGATAAAGATGCCAAGGAGAAGTCCATTATCAGAGAGC
TTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis