Browse Element(s) Details


OsAffx.27602.1.S1_at

Description tigr:9634.m01303
TID=OsAffx.27602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1314010/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13090NANA6+7185602..7187077U-box domain containing protein, expressed
LOC_Os06g13100OsAffx.27601.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13100Os.15218.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed
LOC_Os06g13150OsAffx.27603.1.S1_at11/116+7215474..7216002hypothetical protein
LOC_Os06g13160Os.54594.1.S1_at11/116+7217854..7219284Plant viral-response family protein, expressed
LOC_Os06g13170Os.53308.1.A1_at7/116+7220866..7223018methyltransferase GidB family protein
LOC_Os06g13180OsAffx.27604.1.S1_x_at11/116+7223985..7225100Matrixin family protein, expressed
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27602.1.S1_at--443--9091Chr06:7210119..7210143 (25 bp)
TGCTCTCGTTTGCAGTGGCTCGTTG
LOC_Os06g13140
OsAffx.27602.1.S1_at--1075--7531Chr06:7210105..7210129 (25 bp)
GTGGCTCGTTGGACTGTGACGTCAA
LOC_Os06g13140
OsAffx.27602.1.S1_at--598--7191NONE
TGACGGTTTCCGAAGCTATTAAAGG
NONE
OsAffx.27602.1.S1_at--77--10491Chr06:7209481..7209505 (25 bp)
TTAAAGGCTCAAAGGTGCACCATGT
LOC_Os06g13140
OsAffx.27602.1.S1_at--640--991Chr06:7209452..7209476 (25 bp)
AGGTTGCTGGGCCTTATTTTCCACT
LOC_Os06g13140
OsAffx.27602.1.S1_at--135--10671Chr06:7209434..7209458 (25 bp)
TTCCACTTGTTTGTATGGCTTTCAA
LOC_Os06g13140
OsAffx.27602.1.S1_at--1023--9631Chr06:7208665..7208689 (25 bp)
TCAGGTCTACTGGTCTATGGTATCA
LOC_Os06g13140
OsAffx.27602.1.S1_at--102--7871Chr06:7208647..7208671 (25 bp)
GGTATCAGTCCAAACAATCTAGGTA
LOC_Os06g13140
OsAffx.27602.1.S1_at--393--9971Chr06:7208624..7208648 (25 bp)
TACCAAGAAGTCGATACCCAGGCGT
LOC_Os06g13140
OsAffx.27602.1.S1_at--421--6251Chr06:7208612..7208636 (25 bp)
GATACCCAGGCGTTAGGTACCTATG
LOC_Os06g13140
OsAffx.27602.1.S1_at--215--6891Chr06:7208586..7208610 (25 bp)
GTATCAGGCCTTCGCGCTAATGAGA
LOC_Os06g13140
Target Sequence 
TGCTCTCGTTTGCAGTGGCTCGTTGGACTGTGACGTCAAGCTTTGGAGAGTGACGGTTTCCGAAGCTATTAAAGGCTCAA
AGGTGCACCATGTTGGAAGGTTGCTGGGCCTTATTTTCCACTTGTTTGTATGGCTTTCAAACTTTGTTGAGTTCAAGGGT
GCGGGGTACATCTACATAAAAGGTATCAGGTCTACTGGTCTATGGTATCAGTCCAAACAATCTAGGTACCAAGAAGTCGA
TACCCAGGCGTTAGGTACCTATGGGTATCAGGCCTTCGCGCTAATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis