Browse Element(s) Details


Os.15218.1.S1_at

Description gb:AK107758.1
DB_XREF= gi:32992967
TID=Os.15218.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A06, full insert sequence.
FL= gb:AK107758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1310011/11CREG1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed
LOC_Os06g13090NANA6+7185602..7187077U-box domain containing protein, expressed
LOC_Os06g13100OsAffx.27601.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13100Os.15218.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15218.1.S1_at--10--5571Chr06:7187948..7187969 (22 bp)
GAAAGTTGAAGTTGATTGACCCTCA
LOC_Os06g13100
Os.15218.1.S1_at--100--8831Chr06:7187936..7187960 (25 bp)
TGATTGACCCTCAATCATCTGAAGC
LOC_Os06g13100
Os.15218.1.S1_at--906--5031Chr06:7187913..7187937 (25 bp)
GCAGATTTGGCCAAAGAAGCACTTT
LOC_Os06g13100
Os.15218.1.S1_at--998--5371Chr06:7187898..7187922 (25 bp)
GAAGCACTTTTTACTAAACATCCTG
LOC_Os06g13100
Os.15218.1.S1_at--986--2071Chr06:7187791..7187905 (25 bp)
ACATCCTGAAATGGAGGGTTGGCCA
LOC_Os06g13100
Os.15218.1.S1_at--136--1071Chr06:7187777..7187799 (23 bp)
AGGGTTGGCCAAAGAATCATCATTT
LOC_Os06g13100
Os.15218.1.S1_at--68--4211Chr06:7187683..7187707 (25 bp)
CCCCACTGAATACCTTGAATATGAG
LOC_Os06g13100
Os.15218.1.S1_at--733--5371Chr06:7187565..7187586 (22 bp)
GAAGAACCGGGCCTTGCTGAAGTCA
LOC_Os06g13100
Os.15218.1.S1_at--920--8991Chr06:7187548..7187572 (25 bp)
TGAAGTCATCCTAAGCGACGCACCA
LOC_Os06g13100
Os.15218.1.S1_at--896--5791Chr06:7187532..7187556 (25 bp)
GACGCACCACGTTTATATGTATGTT
LOC_Os06g13100
Os.15218.1.S1_at--166--5511Chr06:7187453..7187477 (25 bp)
GAACACATCTTGTTCATCTTGAATA
LOC_Os06g13100
Target Sequence 
GAAAGTTGAAGTTGATTGACCCTCAATCATCTGAAGCAGATTTGGCCAAAGAAGCACTTTTTACTAAACATCCTGAAATG
GAGGGTTGGCCAAAGAATCATCATTTCCAAATCTTCAAATTGGAAATCAAAAACATATTTTTGATTGATTGGTTTGGGGG
TCCTAAGCCTATATCCCCCACTGAATACCTTGAATATGAGAAGAACCGGGCCTTGCTGAAGTCATCCTAAGCGACGCACC
ACGTTTATATGTATGTTGTAAAGATAAACAGTAAATTAATTATATATGCTATGTACATATTTACATACTGTGAACACATC
TTGTTCATCTTGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis