Browse Element(s) Details


Os.7688.2.S1_x_at

Description gb:NM_196747.1
DB_XREF= gi:37534853
TID=Os.7688.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7688 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) contains similarity to anion transporter (OSJNBa0076M18.1), mRNA.
PROD=contains similarity to anion transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3104010/11expressed protein
LOC_Os12g113701/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31030Os.17789.1.S1_a_at11/1110+15871859..15878533MT-A70 family protein, expressed
LOC_Os10g31040Os.7688.1.S1_at11/1110+15896022..15909454expressed protein
LOC_Os10g31040Os.7688.2.S1_x_at10/1110+15896022..15909454expressed protein
LOC_Os10g31050OsAffx.30619.1.S1_at11/1110+15910366..15913341hypothetical protein
LOC_Os10g31060NANA10+15916405..15917842transposon protein, putative, unclassified
LOC_Os10g31070OsAffx.8071.1.S1_at11/1110+15930117..15930680hypothetical protein
LOC_Os10g31080OsAffx.20300.1.S1_at10/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31080OsAffx.24861.1.S1_at8/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7688.2.S1_x_at--891--3732Chr10:15907432..15907456 (25 bp)
CTCAACATGTCGTGGACCGCCATTA
LOC_Os10g31040
Os.7688.2.S1_x_at--24--3251Chr10:15907498..15907865 (25 bp)
CAAGCTTGCCTCGAGAAGGTGTCAT
LOC_Os10g31040
Os.7688.2.S1_x_at--375--3871Chr10:15907874..15907898 (25 bp)
CTGATCTTCTTCTGCGGGATGTTCA
LOC_Os10g31040
Os.7688.2.S1_x_at--611--5191Chr10:15907926..15907950 (25 bp)
GAATTCCAAACACTCTCTGGGAGCT
LOC_Os10g31040
Os.7688.2.S1_x_at--959--5571Chr10:15907981..15908005 (25 bp)
GAAAGGCGTCGTTCTTCTCGCGATC
LOC_Os10g31040
Os.7688.2.S1_x_at--1100--6391Chr10:15908002..15908026 (25 bp)
GATCGTCATCCTTGTTCTGTCAAAT
LOC_Os10g31040
Os.7688.2.S1_x_at--444--6651NONE
GTTCCAACAGTTCTACTGCTGGGCA
NONE
Os.7688.2.S1_x_at--301--2791Chr10:15908698..15908722 (25 bp)
AAGAGTGGCAGCATCAGCCGCAGCG
LOC_Os10g31040
Os.7688.2.S1_x_at--725--6411Chr10:15908722..15908746 (25 bp)
GATCTCCCCTGCATCGGAGAAGAAA
LOC_Os10g31040
Os.7688.2.S1_x_at--249--1431Chr10:15908742..15908766 (25 bp)
AGAAAGCCTGGCTGATCCTGGCCTG
LOC_Os10g31040
Os.7688.2.S1_x_at--172--8411Chr10:15908838..15908862 (25 bp)
GGCGCGCGCAGTTCTTCGGGTACAA
LOC_Os10g31040
Target Sequence 
CTCAACATGTCGTGGACCGCCATTACCGCCGCCCTCATCCTCCTCGCCCTCGACTTCACTGACGCCCAAGCTTGCCTCGA
GAAGGTGTCATACTCGCTGCTGATCTTCTTCTGCGGGATGTTCATCACGGTGGATGGATTCAACAAGACTGGAATTCCAA
ACACTCTCTGGGAGCTCGTCGAGCCGTATGCGAGAATCGATAGCCCGAAAGGCGTCGTTCTTCTCGCGATCGTCATCCTT
GTTCTGTCAAATGTGGCATCAAATGTTCCAACAGTTCTACTGCTGGGCACAAGAGTGGCAGCATCAGCCGCAGCGATCTC
CCCTGCATCGGAGAAGAAAGCCTGGCTGATCCTGGCCTGGGTGAGCACGGTGGCCGGCAACCTGACCCTCCTCGGCTCAG
CCGCGAACCTGATCGTCTGCGAGCAGGCGAGGCGCGCGCAGTTCTTCGGGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7688.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis