Browse Element(s) Details


OsAffx.30619.1.S1_at

Description tigr:9638.m02677
TID=OsAffx.30619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3105011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31040Os.7688.1.S1_at11/1110+15896022..15909454expressed protein
LOC_Os10g31040Os.7688.2.S1_x_at10/1110+15896022..15909454expressed protein
LOC_Os10g31050OsAffx.30619.1.S1_at11/1110+15910366..15913341hypothetical protein
LOC_Os10g31060NANA10+15916405..15917842transposon protein, putative, unclassified
LOC_Os10g31070OsAffx.8071.1.S1_at11/1110+15930117..15930680hypothetical protein
LOC_Os10g31080OsAffx.20300.1.S1_at10/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31080OsAffx.24861.1.S1_at8/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30619.1.S1_at--62--4351Chr10:15912924..15912948 (25 bp)
CCAGGCAGATGCCAACCTTGTGTTG
LOC_Os10g31050
OsAffx.30619.1.S1_at--806--1091Chr10:15913007..15913031 (25 bp)
AGTGTGGAGCAATCGCACTTCGGTC
LOC_Os10g31050
OsAffx.30619.1.S1_at--393--5111Chr10:15913021..15913045 (25 bp)
GCACTTCGGTCTGGTATCTTTGATA
LOC_Os10g31050
OsAffx.30619.1.S1_at--1067--7071Chr10:15913051..15913075 (25 bp)
GTCAACACACAATGTCAAGGCCCAG
LOC_Os10g31050
OsAffx.30619.1.S1_at--960--2931Chr10:15913067..15913091 (25 bp)
AAGGCCCAGACACCAGCGTCAAGGA
LOC_Os10g31050
OsAffx.30619.1.S1_at--820--9771Chr10:15913140..15913164 (25 bp)
TAAGGTGAACCTCCTCACGTTGTGC
LOC_Os10g31050
OsAffx.30619.1.S1_at--1094--471Chr10:15913179..15913203 (25 bp)
ATCTGAGGCCTTGCCGATGATGCAG
LOC_Os10g31050
OsAffx.30619.1.S1_at--622--5011Chr10:15913200..15913224 (25 bp)
GCAGGGTGGTAAACAGCTCTTCTCT
LOC_Os10g31050
OsAffx.30619.1.S1_at--624--10571Chr10:15913219..15913243 (25 bp)
TTCTCTGACAACATTCACCGGCTTG
LOC_Os10g31050
OsAffx.30619.1.S1_at--362--3371Chr10:15913234..15913258 (25 bp)
CACCGGCTTGTGATGTTGCTATCTC
LOC_Os10g31050
OsAffx.30619.1.S1_at--80--731Chr10:15913246..15913270 (25 bp)
ATGTTGCTATCTCCTGGATCATCAC
LOC_Os10g31050
Target Sequence 
CCAGGCAGATGCCAACCTTGTGTTGGCTGATCCCAATCTTCATCCTGACGCTGCCGCCATAATCGGGGCACAAGTAGAGC
TAGAGTGTGGAGCAATCGCACTTCGGTCTGGTATCTTTGATAGTAGGGTCAACACACAATGTCAAGGCCCAGACACCAGC
GTCAAGGACGCCTTCTTAACCGCCGCCACCACCGCCCTTCACCCCAACCCCGATGCTAAGGTGAACCTCCTCACGTTGTG
CAAGGCGATGATGGGATCTGAGGCCTTGCCGATGATGCAGGGTGGTAAACAGCTCTTCTCTGACAACATTCACCGGCTTG
TGATGTTGCTATCTCCTGGATCATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis