Browse Element(s) Details


Os.7688.1.S1_at

Description gb:AK072242.1
DB_XREF= gi:32982265
TID=Os.7688.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains similarity to anion transporter (OSJNBa0076M18.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169G24, full insert sequence.
FL= gb:AK072242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3104011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31030Os.17789.1.S1_a_at11/1110+15871859..15878533MT-A70 family protein, expressed
LOC_Os10g31040Os.7688.1.S1_at11/1110+15896022..15909454expressed protein
LOC_Os10g31040Os.7688.2.S1_x_at10/1110+15896022..15909454expressed protein
LOC_Os10g31050OsAffx.30619.1.S1_at11/1110+15910366..15913341hypothetical protein
LOC_Os10g31060NANA10+15916405..15917842transposon protein, putative, unclassified
LOC_Os10g31070OsAffx.8071.1.S1_at11/1110+15930117..15930680hypothetical protein
LOC_Os10g31080OsAffx.20300.1.S1_at10/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31080OsAffx.24861.1.S1_at8/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7688.1.S1_at--670--1971Chr10:15908946..15908970 (25 bp)
ACTGATGAACAAGCCTCAAATGGAG
LOC_Os10g31040
Os.7688.1.S1_at--794--9771Chr10:15908984..15909008 (25 bp)
TAAGTAGCAGCAATCGAAATCACGT
LOC_Os10g31040
Os.7688.1.S1_at--1074--5571Chr10:15908999..15909023 (25 bp)
GAAATCACGTAGCAGCAGTACAAGA
LOC_Os10g31040
Os.7688.1.S1_at--515--6591Chr10:15909022..15909046 (25 bp)
GATTGAAGGTTTTACTACTACTACT
LOC_Os10g31040
Os.7688.1.S1_at--964--2011Chr10:15909044..15909068 (25 bp)
ACTACTATTTCAGCTGGTTTCTTCC
LOC_Os10g31040
Os.7688.1.S1_at--870--9951Chr10:15909196..15909220 (25 bp)
TAGCTGGGTTTTGTGTTCTGTACTT
LOC_Os10g31040
Os.7688.1.S1_at--162--7071Chr10:15909221..15909245 (25 bp)
GTAATCTTTTAATCCATGCATGCAT
LOC_Os10g31040
Os.7688.1.S1_at--1009--131Chr10:15909258..15909282 (25 bp)
ATTAAGCGCGAGGTTGTGTCGCTAA
LOC_Os10g31040
Os.7688.1.S1_at--1092--7451Chr10:15909273..15909297 (25 bp)
GTGTCGCTAATTAATCTGCTGAAAA
LOC_Os10g31040
Os.7688.1.S1_at--370--5471Chr10:15909362..15909386 (25 bp)
GAACTTGGAATTAGTCGGCGTACTT
LOC_Os10g31040
Os.7688.1.S1_at--748--4631Chr10:15909379..15909403 (25 bp)
GCGTACTTTGTACCCTGTTGTAAGG
LOC_Os10g31040
Target Sequence 
ACTGATGAACAAGCCTCAAATGGAGAAGAAGAAGTAAGTAAGTAGCAGCAATCGAAATCACGTAGCAGCAGTACAAGATT
GAAGGTTTTACTACTACTACTACTATTTCAGCTGGTTTCTTCCNCANAAGGTAAAGAAGAATGGAAGGAAGCAGCTGTGG
ATATGATGGATGCAGATGGGGACTGAACTGAAATACTAGGTTCAGCTGAGAAAAAACNATGTGATACTTTGTAATGTGTT
TTTTGTTGTTNTAGCTGGGTTTTGTGTTCTGTACTTGTAATCTTTTAATCCATGCATGCATGCGCGAAGCAAAATTAAGC
GCGAGGTTGTGTCGCTAATTAATCTGCTGAAAAGCAAAAAAATAAGTGGGGGCAGATTATTGTTTGTAGATGATGATAAT
TAATGACCCANGTCGATGGAACTTGGAATTAGTCGGCGTACTTTGTACCCTGTTGTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis