Browse Element(s) Details


OsAffx.7555.1.S1_at

Description tigr:9640.m01087
TID=OsAffx.7555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1144010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11410OsAffx.2609.2.S1_x_at3/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11410OsAffx.2609.2.S1_at3/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11410OsAffx.9194.2.S1_at1/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11420NANA12+6163326..6163544hypothetical protein
LOC_Os12g11430Os.2358.1.S1_at3/1112+6173335..6178613hypothetical protein
LOC_Os12g11430Os.40360.1.S1_x_at1/1112+6173335..6178613hypothetical protein
LOC_Os12g11440OsAffx.7555.1.S1_at10/1112+6182914..6184609hypothetical protein
LOC_Os12g11450OsAffx.19614.1.S1_at11/1112+6191979..6192473hypothetical protein
LOC_Os12g11460NANA12+6193056..6194378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11470NANA12+6196546..6196971retrotransposon protein, putative, unclassified
LOC_Os12g11480NANA12+6200270..6201195retrotransposon protein, putative, unclassified
LOC_Os12g11490OsAffx.7556.1.S1_at11/1112+6202087..6205412hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7555.1.S1_at--491--7691Chr12:6183360..6183384 (25 bp)
GGGTGCTTTTTATAGCCTTGGAATG
LOC_Os12g11440
OsAffx.7555.1.S1_at--127--3791Chr12:6183457..6183481 (25 bp)
CTCGGCGTCGATTTTTGCGGGCAGA
LOC_Os12g11440
OsAffx.7555.1.S1_at--1109--7711Chr12:6183515..6183539 (25 bp)
GGGTGGACCGCGTCAACACTCGCGC
LOC_Os12g11440
OsAffx.7555.1.S1_at--550--2791NONE
AAGATGACAGTTGCTAATGCTGGAA
NONE
OsAffx.7555.1.S1_at--174--611Chr12:6184362..6184386 (25 bp)
ATGCTGGAAATTTCGGTAACCTGAA
LOC_Os12g11440
OsAffx.7555.1.S1_at--1047--7051Chr12:6184377..6184401 (25 bp)
GTAACCTGAAAATTCACCATGCTGA
LOC_Os12g11440
OsAffx.7555.1.S1_at--797--8971Chr12:6184399..6184423 (25 bp)
TGAAAATTCACAAACGCACTCCTCG
LOC_Os12g11440
OsAffx.7555.1.S1_at--946--3131Chr12:6184403..6184427 (25 bp)
AATTCACAAACGCACTCCTCGGTTT
LOC_Os12g11440
OsAffx.7555.1.S1_at--185--8391Chr12:6184511..6184535 (25 bp)
GGCGACGCCTTGTCGTCTAGGAGAC
LOC_Os12g11440
OsAffx.7555.1.S1_at--416--9411Chr12:6184523..6184547 (25 bp)
TCGTCTAGGAGACTTTTGTCCCCAA
LOC_Os12g11440
OsAffx.7555.1.S1_at--1087--10051Chr12:6184528..6184552 (25 bp)
TAGGAGACTTTTGTCCCCAAGAGTA
LOC_Os12g11440
Target Sequence 
GGGTGCTTTTTATAGCCTTGGAATGGCGGGATCAAGCCCGAGGGAGGCGAGATCGGCCGGCGACGTGGGACGCCTACATG
GGGGTGGAGTGGGGAGGCTCGGCGTCGATTTTTGCGGGCAGAGTGGGGGAAAAGGTGGAGGAGGTGGAGGACGTGGGGTG
GACCGCGTCAACACTCGCGCGGGAGAGGGGAGACGCGCGGGAGAGGTAGCGACGTGGGGGCGGCAGCATGGCGGCGGTTG
GGGCGACGGGAGGTTGGGGAAAAAGATGACAGTTGCTAATGCTGGAAATTTCGGTAACCTGAAAATTCACCATGCTGAAA
ATTCACAAACGCACTCCTCGGTTTCACTATTGATTTCTTCCCTTGCGAAGGCGAAATCGAAACCTTCACAAACTTTCCGT
GGCACACTACAACCTTGGGTGCTCACCGGCGACGCCTTGTCGTCTAGGAGACTTTTGTCCCCAAGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis