Browse Element(s) Details


Os.51222.1.S1_at

Description gb:AK066023.1
DB_XREF= gi:32976041
TID=Os.51222.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045K04, full insert sequence.
FL= gb:AK062180.1 gb:AK066023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2923011/11PPR986-12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29190Os.7926.1.S1_at11/1111+16415978..1641805640S ribosomal protein S5, putative, expressed
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein
LOC_Os11g29260NANA11+16468056..16468469hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_x_at5/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_x_at4/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_at3/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_at3/1111+16469884..16472537hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51222.1.S1_at--429--5551Chr11:16444340..16444364 (25 bp)
GAAACCTGCCGCTGGATCACTAAAG
LOC_Os11g29230
Os.51222.1.S1_at--367--4731Chr11:16444383..16444407 (25 bp)
GCTGTCGCGCTAGGGCTGCTGCAAA
LOC_Os11g29230
Os.51222.1.S1_at--939--1031Chr11:16444415..16444439 (25 bp)
AGGTGCCACGGTTCGCGTCACGAAG
LOC_Os11g29230
Os.51222.1.S1_at--347--5491Chr11:16444439..16444463 (25 bp)
GAACATCACCATGTGCAGGGACTGC
LOC_Os11g29230
Os.51222.1.S1_at--111--5731Chr11:16444458..16444482 (25 bp)
GACTGCCACAGCTCCATTAAGCTAT
LOC_Os11g29230
Os.51222.1.S1_at--687--10431Chr11:16444510..16444534 (25 bp)
TTGTCCGGGACAGCAAACGGCTTCA
LOC_Os11g29230
Os.51222.1.S1_at--470--4351Chr11:16444608..16444632 (25 bp)
CCACATGCTACTCTAGGAACTCAAC
LOC_Os11g29230
Os.51222.1.S1_at--886--6311Chr11:16444685..16444709 (25 bp)
GATGAACTGATCACCCTTTGTGATT
LOC_Os11g29230
Os.51222.1.S1_at--683--10151Chr11:16444739..16444763 (25 bp)
TATAAACTCAGGCAGTGTCCCCAAA
LOC_Os11g29230
Os.51222.1.S1_at--105--5031Chr11:16444750..16444774 (25 bp)
GCAGTGTCCCCAAATGATCTGTACA
LOC_Os11g29230
Os.51222.1.S1_at--1099--3011Chr11:16444828..16444852 (25 bp)
AATGCTAGCTTCTTAGGATCAGATC
LOC_Os11g29230
Target Sequence 
GAAACCTGCCGCTGGATCACTAAAGCACCACAGTGAGAGGTTAGCTGTCGCGCTAGGGCTGCTGCAAACACCTCCAGGTG
CCACGGTTCGCGTCACGAAGAACATCACCATGTGCAGGGACTGCCACAGCTCCATTAAGCTATTTTCGCTACTTGAAAAC
AGAGAAATCATTGTCCGGGACAGCAAACGGCTTCACAAGTTCAAGGATGGCCGGTGCTCCTGTGGAGATTTTGGTGCTCT
ATTGTGAGAAGGATGGAAATCTTACCCCCCACATGCTACTCTAGGAACTCAACAGTTTTGTAGTGGAAGCAGGGTTACAA
GTTACAGGTTGCACAGAATTCTTTTGATGAACTGATCACCCTTTGTGATTTTTGTAGATCTTTGTATGAAATCGAAATTT
ATAAACTCAGGCAGTGTCCCCAAATGATCTGTACACAAGGTTAGCATTATAGGACAGTGAATACTTGTGAATCTGCTGTA
AATGCTAAAATGCTAGCTTCTTAGGATCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis