Browse Element(s) Details


OsAffx.31198.1.S1_at

Description tigr:9639.m02642
TID=OsAffx.31198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2922011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29190Os.7926.1.S1_at11/1111+16415978..1641805640S ribosomal protein S5, putative, expressed
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31198.1.S1_at--847--7551Chr11:16439616..16439640 (25 bp)
GGGCCTACTAGTCAGTCTCACCCTT
LOC_Os11g29220
OsAffx.31198.1.S1_at--1095--4131Chr11:16439668..16439692 (25 bp)
CGCTGAGCACGCAGTGGCACCAGTG
LOC_Os11g29220
OsAffx.31198.1.S1_at--874--3451Chr11:16439688..16439712 (25 bp)
CAGTGCCCGGTAATCATTGTCATCG
LOC_Os11g29220
OsAffx.31198.1.S1_at--643--4311Chr11:16439713..16439737 (25 bp)
CCATTGACGACTATGAGAGCCACAT
LOC_Os11g29220
OsAffx.31198.1.S1_at--680--2151Chr11:16439748..16439772 (25 bp)
ACACGAAGGTGGTTGTCCCAGTCTA
LOC_Os11g29220
OsAffx.31198.1.S1_at--1072--10811Chr11:16439760..16439784 (25 bp)
TTGTCCCAGTCTAGAGCCAGCAGTT
LOC_Os11g29220
OsAffx.31198.1.S1_at--757--1691Chr11:16439774..16439798 (25 bp)
AGCCAGCAGTTGTAGGAGCACTCGG
LOC_Os11g29220
OsAffx.31198.1.S1_at--746--851Chr11:16439812..16439836 (25 bp)
ATGGCTGCGGCGGATTAAGCCTCAC
LOC_Os11g29220
OsAffx.31198.1.S1_at--1021--131Chr11:16439825..16439849 (25 bp)
ATTAAGCCTCACCATAACCGTGGAG
LOC_Os11g29220
OsAffx.31198.1.S1_at--68--8351Chr11:16439860..16439884 (25 bp)
GGCTGGTCAATGTTTGGCTGTGCAA
LOC_Os11g29220
OsAffx.31198.1.S1_at--874--5851Chr11:16439888..16439912 (25 bp)
GAGCCGAACGGTGTTCATGGGCCAT
LOC_Os11g29220
Target Sequence 
GGGCCTACTAGTCAGTCTCACCCTTCCTCTCTCCCTCTGGTTCGGCGTGCAGCGCTGAGCACGCAGTGGCACCAGTGCCC
GGTAATCATTGTCATCGCCATTGACGACTATGAGAGCCACATAAAGGCAACGACACGAAGGTGGTTGTCCCAGTCTAGAG
CCAGCAGTTGTAGGAGCACTCGGGGCAACACCGCCGATGGCTGCGGCGGATTAAGCCTCACCATAACCGTGGAGGAGCAC
GGGGGGCTGGTCAATGTTTGGCTGTGCAAGTGGAGCCGAACGGTGTTCATGGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis