Browse Element(s) Details


Os.20242.1.S1_at

Description gb:AK062443.1
DB_XREF= gi:32972461
TID=Os.20242.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-B02, full insert sequence.
FL= gb:AK062443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2921010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29180NANA11+16412969..16413754retrotransposon protein, putative, unclassified
LOC_Os11g29190Os.7926.1.S1_at11/1111+16415978..1641805640S ribosomal protein S5, putative, expressed
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20242.1.S1_at--143--951Chr11:16436619..16436700 (25 bp)
AGGAAGAATGCAGGCCATAGAACAC
LOC_Os11g29210
Os.20242.1.S1_at--777--10611Chr11:16435945..16435969 (25 bp)
TTCGGACTGTGCTTGAAGTAGAGGA
LOC_Os11g29210
Os.20242.1.S1_at--776--6931Chr11:16435928..16435952 (25 bp)
GTAGAGGAATCATCATGGATGGATC
LOC_Os11g29210
Os.20242.1.S1_at--561--9691Chr11:16435905..16435929 (25 bp)
TCAAGGAAATTGTGTATTAATGTCA
LOC_Os11g29210
Os.20242.1.S1_at--415--131Chr11:16435890..16435914 (25 bp)
ATTAATGTCAATGGATACTGCTTTT
LOC_Os11g29210
Os.20242.1.S1_at--757--9731Chr11:16435883..16435907 (25 bp)
TCAATGGATACTGCTTTTGTTGTGC
LOC_Os11g29210
Os.20242.1.S1_at--729--7951Chr11:16435878..16435902 (25 bp)
GGATACTGCTTTTGTTGTGCATGTA
LOC_Os11g29210
Os.20242.1.S1_at--1106--1971Chr11:16435874..16435898 (25 bp)
ACTGCTTTTGTTGTGCATGTATGGA
LOC_Os11g29210
Os.20242.1.S1_at--1135--4971Chr11:16435860..16435884 (25 bp)
GCATGTATGGAGTTATTGCTATGAG
LOC_Os11g29210
Os.20242.1.S1_at--18--6811Chr11:16435849..16435873 (25 bp)
GTTATTGCTATGAGTTTTCCATCAA
LOC_Os11g29210
Os.20242.1.S1_at--1009--7911Chr11:16435802..16435826 (25 bp)
GGATTTTGATCACGTAAAATGATGA
NONE
Target Sequence 
AGGAAGAATGCAGGCCATAGAACACCTCCTCACGGAGCTGGTTCTTCCACTCCCCAAAGAAACAAGGATCCCGCATCTCG
TCCTCGCAGCCAAAGCGCGGTCGGGCATGGTGGTGGGTCTGTGCCTGCTTGGGGCCAATGGAATGAGGGCAATGCTGGTG
GTGGTGGGNCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGGATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTACC
GTCGAGCAACTCCAGCGTGCCACTCCAACTCGGTACAATCAGCACAATCAGCATGCAAATATGCGCAAGAGATTCACATN
TTTCGGACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATTAATGTCAATGGATACTGCTTT
TGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCATCAATANNNAANANNNNANNNANAAAGGATTTTGATCACGTA
AAATGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis